C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379868 DDX58-002 ENSG00000107201 9606 - 9:32455705-32526208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000379868
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000379868 0.179±0.00 0.587±0.00 1.285±0.00 0.275±0.00 0.316±0.00 0.167±0.00 2.598±1.41 0.358±0.13 0.911±0.00 0.516±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000437 CIL_000437_0001 CGP 9:32384603-32526324
CIL_00065D CIL_00065D_0001 CGP 9:32455705-32552553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037907 Ddx58-001 protein_coding Mus_musculus 0 1578
ENSMUST00000142055 Ddx58-006 protein_coding Mus_musculus 0 1266
ENSMUST00000137903 Ddx58-005 processed_transcript Mus_musculus 0 1081
ENSMUST00000135966 Ddx58-010 processed_transcript Mus_musculus 0 545

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