C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00065D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107201-ENSG00000197579 CGP 9606 9:32455705-32552553
GeneTranscriptPositionBiotype
ENSG00000107201 (DDX58)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 		ENST00000379868 (DDX58-002) 32455705-32526208 protein_coding
ENST00000379883 (DDX58-001) 32455705-32526324 protein_coding
ENSG00000197579 (TOPORS)
topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase 		ENST00000360538 (TOPORS-001) 32540544-32552553 protein_coding
ENST00000379858 (TOPORS-002) 32540826-32552553 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00065D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040296-ENSMUSG00000036822 CGP 10090 4:40203773-40269850
GeneTranscriptPositionBiotype
ENSMUSG00000028407 (Toporsos)
topoisomerase I binding, arginine/serine-rich, opposite strand 		ENSMUST00000129758 (Toporsos-001) 40269569-40270940 antisense
ENSMUSG00000036822 (Topors)
topoisomerase I binding, arginine/serine-rich 		ENSMUST00000042575 (Topors-001) 40259601-40269850 protein_coding
ENSMUSG00000040296 (Ddx58)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 		ENSMUST00000037907 (Ddx58-001) 40204849-40239828 protein_coding
ENSMUST00000127026 (Ddx58-004) 40223876-40239722 processed_transcript
ENSMUST00000135966 (Ddx58-010) 40208771-40214072 processed_transcript
ENSMUST00000136435 (Ddx58-009) 40203773-40208543 processed_transcript
ENSMUST00000137903 (Ddx58-005) 40203777-40220600 processed_transcript
ENSMUST00000139110 (Ddx58-007) 40226570-40228356 processed_transcript
ENSMUST00000139583 (Ddx58-003) 40223431-40239755 processed_transcript
ENSMUST00000140616 (Ddx58-008) 40208185-40208795 processed_transcript
ENSMUST00000142055 (Ddx58-006) 40208853-40239700 protein_coding
ENSMUST00000149539 (Ddx58-002) 40227059-40239825 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065D_0001ENSG00000107201ENST00000379868ENST00000379883ENSG00000197579ENST00000360538ENST00000379858CIL_00065D_0002ENSMUSG00000028407ENSMUST00000129758ENSMUSG00000036822ENSMUST00000042575ENSMUSG00000040296ENSMUST00000037907ENSMUST00000127026ENSMUST00000135966ENSMUST00000136435ENSMUST00000137903ENSMUST00000139110ENSMUST00000139583ENSMUST00000140616ENSMUST00000142055ENSMUST00000149539
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065D_0001ENSG00000107201ENST00000379868ENST00000379883ENSG00000197579ENST00000360538ENST00000379858CIL_00065D_0002ENSMUSG00000028407ENSMUST00000129758ENSMUSG00000036822ENSMUST00000042575ENSMUSG00000040296ENSMUST00000037907ENSMUST00000137903ENSMUST00000142055
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107201 ENST00000379868 N/A N/A N/A 0.179±0.00 0.587±0.00 1.285±0.00 0.275±0.00 0.316±0.00 0.167±0.00 2.598±1.41 0.358±0.13 0.911±0.00 0.516±0.01 N/A
ENST00000379883 1.160±0.00 3.109±0.00 1.260±0.00 0.812±0.26 2.748±2.16 2.046±1.58 1.158±0.00 1.739±0.60 1.002±0.31 1.692±0.00 0.658±0.00 2.042±0.51 2.380±0.67 1.504±1.05
ENSG00000197579 ENST00000360538 1.885±0.00 2.242±0.00 N/A 1.789±0.09 2.141±0.19 N/A 0.419±0.00 2.488±0.00 1.891±0.97 2.713±0.21 0.472±0.32 3.033±1.12 1.549±0.34 5.202±0.00
ENST00000379858 2.578±0.00 1.847±0.00 3.524±0.00 3.457±0.00 3.103±0.96 3.537±0.56 1.033±0.00 3.941±0.48 1.749±0.77 2.368±0.78 1.270±0.86 3.546±1.51 4.139±3.05 7.403±2.74
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028407 ENSMUST00000129758 13.644±1.40 45.511±4.81 9.942±0.00 N/A 22.778±3.62 22.461±7.17 N/A 19.763±4.86 25.597±1.96 18.339±6.89 N/A 36.083±7.35 N/A N/A
ENSMUSG00000036822 ENSMUST00000042575 3.690±1.08 6.741±0.64 7.035±0.56 6.231±0.29 3.765±0.89 3.569±0.39 N/A 3.495±0.25 4.905±2.12 4.699±0.11 2.612±0.15 7.506±5.01 15.294±5.97 15.154±22.15
ENSMUSG00000040296 ENSMUST00000037907 7.154±1.19 11.266±1.33 3.984±0.86 0.515±0.19 8.126±1.94 2.912±0.61 1.925±0.36 5.968±0.42 3.255±1.84 9.756±0.61 0.423±0.16 6.348±1.78 8.953±1.58 0.820±0.30
ENSMUST00000127026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137903 N/A N/A 1.545±0.50 0.250±0.07 2.191±0.65 1.021±0.00 N/A N/A 0.836±0.51 N/A 0.164±0.02 2.070±0.41 2.410±0.78 0.071±0.00
ENSMUST00000139110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142055 N/A N/A N/A N/A 5.269±0.00 N/A N/A N/A N/A N/A 0.226±0.00 1.995±0.00 N/A N/A
ENSMUST00000149539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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