C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000437_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122729-ENSG00000107201 CGP 9606 9:32384603-32526324
GeneTranscriptPositionBiotype
ENSG00000107201 (DDX58)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 		ENST00000379868 (DDX58-002) 32455705-32526208 protein_coding
ENST00000379883 (DDX58-001) 32455705-32526324 protein_coding
ENSG00000122729 (ACO1)
aconitase 1, soluble 		ENST00000309951 (ACO1-001) 32384620-32454769 protein_coding
ENST00000379923 (ACO1-002) 32384620-32450836 protein_coding
ENST00000541043 (ACO1-201) 32384603-32450832 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_000437_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028405-ENSMUSG00000040296 CGP 10090 4:40143081-40239828
GeneTranscriptPositionBiotype
ENSMUSG00000028405 (Aco1)
aconitase 1 		ENSMUST00000102973 (Aco1-001) 40143081-40198338 protein_coding
ENSMUST00000135787 (Aco1-003) 40190530-40196404 processed_transcript
ENSMUST00000142360 (Aco1-004) 40166877-40175866 processed_transcript
ENSMUST00000152911 (Aco1-002) 40163719-40169360 processed_transcript
ENSMUSG00000040296 (Ddx58)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 		ENSMUST00000037907 (Ddx58-001) 40204849-40239828 protein_coding
ENSMUST00000127026 (Ddx58-004) 40223876-40239722 processed_transcript
ENSMUST00000135966 (Ddx58-010) 40208771-40214072 processed_transcript
ENSMUST00000136435 (Ddx58-009) 40203773-40208543 processed_transcript
ENSMUST00000137903 (Ddx58-005) 40203777-40220600 processed_transcript
ENSMUST00000139110 (Ddx58-007) 40226570-40228356 processed_transcript
ENSMUST00000139583 (Ddx58-003) 40223431-40239755 processed_transcript
ENSMUST00000140616 (Ddx58-008) 40208185-40208795 processed_transcript
ENSMUST00000142055 (Ddx58-006) 40208853-40239700 protein_coding
ENSMUST00000149539 (Ddx58-002) 40227059-40239825 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000437_0001ENSG00000107201ENST00000379868ENST00000379883ENSG00000122729ENST00000309951ENST00000379923ENST00000541043CIL_000437_0002ENSMUSG00000028405ENSMUST00000102973ENSMUST00000135787ENSMUST00000142360ENSMUST00000152911ENSMUSG00000040296ENSMUST00000037907ENSMUST00000127026ENSMUST00000135966ENSMUST00000136435ENSMUST00000137903ENSMUST00000139110ENSMUST00000139583ENSMUST00000140616ENSMUST00000142055ENSMUST00000149539
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000437_0001ENSG00000107201ENST00000379868ENST00000379883ENSG00000122729ENST00000309951ENST00000379923ENST00000541043CIL_000437_0002ENSMUSG00000028405ENSMUST00000102973ENSMUSG00000040296ENSMUST00000037907ENSMUST00000137903ENSMUST00000142055
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107201 ENST00000379868 N/A N/A N/A 0.179±0.00 0.587±0.00 1.285±0.00 0.275±0.00 0.316±0.00 0.167±0.00 2.598±1.41 0.358±0.13 0.911±0.00 0.516±0.01 N/A
ENST00000379883 1.160±0.00 3.109±0.00 1.260±0.00 0.812±0.26 2.748±2.16 2.046±1.58 1.158±0.00 1.739±0.60 1.002±0.31 1.692±0.00 0.658±0.00 2.042±0.51 2.380±0.67 1.504±1.05
ENSG00000122729 ENST00000309951 N/A 1.043±0.00 0.975±0.00 0.435±0.17 4.441±3.62 0.920±0.00 N/A 2.421±0.33 N/A N/A 0.193±0.00 0.744±0.00 0.784±0.00 0.855±0.14
ENST00000379923 45.447±0.00 12.019±0.00 6.775±0.00 4.001±1.56 36.352±29.41 10.588±4.11 5.518±1.49 27.386±4.08 22.573±18.09 4.061±0.31 6.968±5.49 9.489±4.30 12.622±2.67 12.482±1.92
ENST00000541043 N/A N/A 5.330±0.00 N/A N/A N/A 13.524±0.00 N/A N/A 3.792±0.00 N/A 7.309±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028405 ENSMUST00000102973 43.053±21.32 16.910±2.51 24.933±2.48 13.393±4.95 26.601±9.72 6.655±0.69 6.507±1.26 42.129±4.77 22.772±7.65 11.207±2.44 3.741±0.37 19.789±13.37 36.166±6.56 2.126±0.63
ENSMUST00000135787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040296 ENSMUST00000037907 7.154±1.19 11.266±1.33 3.984±0.86 0.515±0.19 8.126±1.94 2.912±0.61 1.925±0.36 5.968±0.42 3.255±1.84 9.756±0.61 0.423±0.16 6.348±1.78 8.953±1.58 0.820±0.30
ENSMUST00000127026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137903 N/A N/A 1.545±0.50 0.250±0.07 2.191±0.65 1.021±0.00 N/A N/A 0.836±0.51 N/A 0.164±0.02 2.070±0.41 2.410±0.78 0.071±0.00
ENSMUST00000139110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142055 N/A N/A N/A N/A 5.269±0.00 N/A N/A N/A N/A N/A 0.226±0.00 1.995±0.00 N/A N/A
ENSMUST00000149539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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