C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RPGRIP1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379925 RPGRIP1L-009 ENSG00000103494 9606 - 16:53600778-53703846 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyLiverOvaryTestisENST00000379925
Transcript ID Adipose Kidney Liver Ovary Testis
ENST00000379925 0.046±0.00 0.498±0.00 0.070±0.06 0.282±0.00 1.827±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OC CIL_0005OC_0001 CGP 16:53491040-53703938
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001736 IEA establishment of planar polarity
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005911 IDA cell-cell junction
GO:0005923 IEA tight junction
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0007163 IEA establishment or maintenance of cell polarity
GO:0007368 IEA determination of left/right symmetry
GO:0007420 IEA brain development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0021532 IEA neural tube patterning
GO:0021537 IEA telencephalon development
GO:0021549 IEA cerebellum development
GO:0021670 IEA lateral ventricle development
GO:0021772 IEA olfactory bulb development
GO:0022038 IEA corpus callosum development
GO:0031870 IPI thromboxane A2 receptor binding
GO:0035108 IEA limb morphogenesis
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0035869 IEA ciliary transition zone
GO:0036064 IDA ciliary basal body
GO:0042384 IEA cilium assembly
GO:0043010 IEA camera-type eye development
GO:0043584 IEA nose development
GO:0045744 IDA negative regulation of G-protein coupled receptor protein signaling pathway
GO:0060039 IEA pericardium development
GO:0060271 IEA cilium morphogenesis
GO:0060322 IEA head development
GO:0090102 IEA cochlea development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047783 Rpgrip1l-001 protein_coding Mus_musculus 0 3517
ENSMUST00000139113 Rpgrip1l-002 nonsense_mediated_decay Mus_musculus 0 2119
ENSMUST00000136198 Rpgrip1l-004 retained_intron Mus_musculus 0 861
ENSMUST00000132757 Rpgrip1l-003 protein_coding Mus_musculus 0 342

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