C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basonuclin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380672 BNC2-008 ENSG00000173068 9606 - 9:16409503-16870706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380672
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380672 0.656±0.00 0.088±0.00 0.778±0.34 1.446±0.59 0.127±0.00 1.188±0.00 3.102±0.00 0.666±0.08 0.414±0.00 2.404±2.15 0.435±0.30 0.934±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0001 UCNEbase 9:15728012-17487698
CIL_000148 CIL_000148_0001 CGP 9:16409503-17503923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003416 IEA endochondral bone growth
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043586 IEA tongue development
GO:0046872 IEA metal ion binding
GO:0060021 IEA palate development
GO:0060485 IEA mesenchyme development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107198 Bnc2-007 protein_coding Mus_musculus 0 5129
ENSMUST00000102820 Bnc2-002 protein_coding Mus_musculus 0 4713
ENSMUST00000176691 Bnc2-001 protein_coding Mus_musculus 0 4157
ENSMUST00000176612 Bnc2-004 protein_coding Mus_musculus 0 3458
ENSMUST00000175800 Bnc2-005 protein_coding Mus_musculus 0 1454
ENSMUST00000176971 Bnc2-012 protein_coding Mus_musculus 0 1345
ENSMUST00000176418 Bnc2-006 protein_coding Mus_musculus 0 1105
ENSMUST00000175757 Bnc2-022 processed_transcript Mus_musculus 0 1083
ENSMUST00000123276 Bnc2-003 retained_intron Mus_musculus 0 959
ENSMUST00000176346 Bnc2-015 nonsense_mediated_decay Mus_musculus 0 898
ENSMUST00000177256 Bnc2-018 processed_transcript Mus_musculus 0 745
ENSMUST00000176947 Bnc2-016 protein_coding Mus_musculus 0 619
ENSMUST00000176702 Bnc2-011 protein_coding Mus_musculus 0 603
ENSMUST00000175969 Bnc2-017 protein_coding Mus_musculus 0 568
ENSMUST00000176476 Bnc2-019 processed_transcript Mus_musculus 0 521
ENSMUST00000176370 Bnc2-014 protein_coding Mus_musculus 0 468
ENSMUST00000177277 Bnc2-010 protein_coding Mus_musculus 0 444
ENSMUST00000177040 Bnc2-020 protein_coding Mus_musculus 0 289
ENSMUST00000175756 Bnc2-013 protein_coding Mus_musculus 0 265
ENSMUST00000176601 Bnc2-009 protein_coding Mus_musculus 0 265
ENSMUST00000176998 Bnc2-008 protein_coding Mus_musculus 0 265
ENSMUST00000176264 Bnc2-021 processed_transcript Mus_musculus 1e-32 148

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