C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival of motor neuron 2, centromeric
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380742 SMN2-002 ENSG00000205571 9606 + 5:70049664-70077592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000380742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000380742 0.532±0.00 0.645±0.00 0.313±0.00 0.283±0.00 0.760±0.00 0.313±0.00 0.243±0.10 0.550±0.00 0.640±0.49 0.464±0.00 0.860±0.80 0.738±0.28 0.613±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0002 CGP 5:70025247-70078522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 IEA mRNA processing
GO:0007399 IEA nervous system development
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0042307 IDA positive regulation of protein import into nucleus
GO:0042802 IPI identical protein binding
GO:0097504 IDA Gemini of coiled bodies

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022147 Smn1-001 protein_coding Mus_musculus 0 582
ENSMUST00000134514 Smn1-002 retained_intron Mus_musculus 0 283
ENSMUST00000140745 Smn1-006 nonsense_mediated_decay Mus_musculus 0 250
ENSMUST00000125572 Smn1-007 retained_intron Mus_musculus 2.94273e-44 183
ENSDART00000127956 smn1-201 protein_coding Danio_rerio 1e-17 95
ENSDART00000028099 smn1-001 protein_coding Danio_rerio 1e-17 95

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