C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival motor neuron 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022147 Smn1-001 ENSMUSG00000021645 10090 + 13:100124852-100137690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022147 4.578±1.32 2.882±0.61 16.002±1.37 14.896±7.00 2.756±1.02 4.057±0.83 2.121±0.79 4.439±0.96 10.050±9.25 5.116±0.99 4.334±0.62 8.918±2.61 18.238±6.67 6.043±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0003 CGP 13:100107997-100137690
CIL_0004ZC CIL_0004ZC_0002 CGP 13:100124852-100202092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0007019 IMP microtubule depolymerization
GO:0007409 IMP axonogenesis
GO:0015030 ISS Cajal body
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex
GO:0097504 ISS Gemini of coiled bodies

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127956 smn1-201 protein_coding Danio_rerio 3e-19 100
ENSDART00000028099 smn1-001 protein_coding Danio_rerio 3e-19 100
ENST00000351205 SMN1-201 protein_coding Homo_sapiens 0 815
ENST00000380707 SMN1-001 protein_coding Homo_sapiens 0 815
ENST00000380741 SMN2-201 protein_coding Homo_sapiens 0 809
ENST00000380742 SMN2-002 protein_coding Homo_sapiens 0 582
ENST00000380743 SMN2-001 protein_coding Homo_sapiens 0 809
ENST00000503079 SMN1-008 protein_coding Homo_sapiens 0 582
ENST00000503678 SMN2-006 retained_intron Homo_sapiens 0 713
ENST00000506163 SMN1-007 protein_coding Homo_sapiens 0 756
ENST00000506239 SMN1-003 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000506678 RP11-335L23.2-001 processed_pseudogene Homo_sapiens 0 370
ENST00000506734 SMN2-003 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000509805 SMN2-011 retained_intron Homo_sapiens 0 287
ENST00000511812 SMN2-004 protein_coding Homo_sapiens 0 322
ENST00000513228 SMN1-009 retained_intron Homo_sapiens 0 287
ENST00000514914 SMN2-013 retained_intron Homo_sapiens 0 322
ENST00000514951 SMN1-002 protein_coding Homo_sapiens 0 327
ENST00000610814 SMN2-203 protein_coding Homo_sapiens 0 760
ENST00000611442 SMN2-206 protein_coding Homo_sapiens 0 588
ENST00000612446 SMN2-003 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000612974 SMN1-202 protein_coding Homo_sapiens 0 760
ENST00000614240 SMN2-202 protein_coding Homo_sapiens 0 582
ENST00000614610 SMN1-203 protein_coding Homo_sapiens 0 815
ENST00000614773 SMN1-204 protein_coding Homo_sapiens 0 588
ENST00000618251 SMN2-001 protein_coding Homo_sapiens 0 821
ENST00000618661 SMN2-207 protein_coding Homo_sapiens 0 821
ENST00000619658 SMN2-002 protein_coding Homo_sapiens 0 327
ENST00000622158 SMN2-204 protein_coding Homo_sapiens 0 588
ENST00000622739 SMN2-205 protein_coding Homo_sapiens 0 821
ENST00000624254 SMN2-011 retained_intron Homo_sapiens 0 268
ENST00000624634 SMN2-007 protein_coding Homo_sapiens 0 588

Loading