C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose 4,6-dehydratase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380815 GMDS-001 ENSG00000112699 9606 - 6:1623806-2245692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380815 3.488±0.00 8.017±0.00 1.052±0.00 2.409±0.73 11.492±5.40 10.075±3.04 2.149±0.00 5.395±4.14 5.695±5.38 4.628±4.01 0.650±0.00 7.950±3.27 5.094±2.20 5.767±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0002 CGP 6:1609972-2245692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005737 IC cytoplasm
GO:0007219 ISS Notch signaling pathway
GO:0008446 IDA:IEA GDP-mannose 4,6-dehydratase activity
GO:0019673 IDA:IEA GDP-mannose metabolic process
GO:0042351 IEA 'de novo' GDP-L-fucose biosynthetic process
GO:0050662 IEA coenzyme binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070401 IDA NADP+ binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041859 Gmds-001 protein_coding Mus_musculus 0 1452
ENSMUST00000178294 Gmds-002 retained_intron Mus_musculus 0 996
ENSMUST00000120553 Gm15160-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000178313 Gmds-003 processed_transcript Mus_musculus 5.00264e-43 180

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