C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GDP-mannose 4,6-dehydratase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112699 GMDS 9606 - 6:1623806-2245692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380805 GMDS-002 1623807-1930999 retained_intron
  ENST00000380815 GMDS-001 1623806-2245692 protein_coding
  ENST00000467288 GMDS-005 1623806-1625501 processed_transcript
  ENST00000476972 GMDS-003 1623806-1624740 processed_transcript
  ENST00000486793 GMDS-004 1623806-1626188 processed_transcript
  ENST00000530075 GMDS-009 1959706-1960909 retained_intron
  ENST00000530459 GMDS-008 1930107-2043433 processed_transcript
  ENST00000530927 GMDS-007 1623806-2175991 protein_coding
  ENST00000531690 GMDS-006 1717595-1960790 processed_transcript
  ENST00000533279 GMDS-010 1679172-1726477 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380815ENST00000467288ENST00000476972ENST00000486793ENST00000530459ENST00000530927ENST00000531690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380815 3.488±0.00 8.017±0.00 1.052±0.00 2.409±0.73 11.492±5.40 10.075±3.04 2.149±0.00 5.395±4.14 5.695±5.38 4.628±4.01 0.650±0.00 7.950±3.27 5.094±2.20 5.767±1.20
ENST00000467288 N/A N/A 0.585±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476972 2.339±0.00 N/A N/A N/A N/A 14.564±0.00 N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A
ENST00000486793 N/A N/A N/A N/A N/A N/A N/A N/A 1.756±0.00 N/A N/A N/A N/A N/A
ENST00000530459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.688±0.00 N/A N/A N/A
ENST00000530927 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.939±0.00 0.559±0.00 9.270±1.13 2.781±0.71 1.993±0.00
ENST00000531690 N/A 5.650±0.00 N/A N/A N/A 10.894±0.00 0.761±0.00 6.529±1.90 N/A N/A N/A 71.696±0.00 14.380±0.00 8.162±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0002 CGP 6:1609972-2245692

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005737 IC cytoplasm
GO:0007219 ISS Notch signaling pathway
GO:0008446 IDA:IEA GDP-mannose 4,6-dehydratase activity
GO:0019673 IDA:IEA GDP-mannose metabolic process
GO:0042351 IEA 'de novo' GDP-L-fucose biosynthetic process
GO:0050662 IEA coenzyme binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070401 IDA NADP+ binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026629 gmds GDP-mannose 4,6-dehydratase protein_coding Danio_rerio
ENSMUSG00000038372 Gmds GDP-mannose 4, 6-dehydratase protein_coding Mus_musculus

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