C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 49, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381323 FAM49A-001 ENSG00000197872 9606 - 2:16549459-16665834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381323
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381323 8.357±0.00 4.386±0.00 0.254±0.00 14.182±4.62 3.859±0.00 3.188±2.27 0.964±0.00 0.696±0.00 1.019±0.21 3.851±0.00 5.312±0.00 3.009±0.13 5.791±0.35 1.151±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094N CIL_00094N_0001 VISTA 2:16454785-17055066

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IDA intracellular

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069005 Fam49a-201 protein_coding Mus_musculus 0 1877
ENSMUST00000069066 Fam49a-202 protein_coding Mus_musculus 0 1877
ENSDART00000002773 znf395-001 protein_coding Danio_rerio 0 667
ENSDART00000062791 znf395-201 protein_coding Danio_rerio 0 662
ENSDART00000137915 znf395-002 protein_coding Danio_rerio 0 606
ENSDART00000153070 znf395-006 retained_intron Danio_rerio 0 416
ENSDART00000153332 znf395-005 nonsense_mediated_decay Danio_rerio 0 348
ENSDART00000039717 fam49ba-001 protein_coding Danio_rerio 0 320
ENSDART00000145648 fam49ba-003 processed_transcript Danio_rerio 0 233
ENSDART00000056621 fam49ba-201 protein_coding Danio_rerio 2e-36 159
ENSDART00000146452 fam49ba-005 protein_coding Danio_rerio 2e-36 159
ENSDART00000141418 fam49ba-002 protein_coding Danio_rerio 2e-36 159

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