C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381513 SMARCD1-002 ENSG00000066117 9606 + 12:50085200-50100642 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381513 7.184±0.00 7.079±0.00 0.278±0.00 3.275±1.85 5.342±0.00 4.034±0.00 2.626±0.00 8.084±0.00 2.076±1.45 5.505±0.00 4.207±0.00 3.513±0.25 6.469±1.55 9.665±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000F4 CIL_0000F4_0001 CGP 12:50084972-50111319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0032947 IDA protein complex scaffold
GO:0048096 IMP chromatin-mediated maintenance of transcription
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023759 Smarcd1-201 protein_coding Mus_musculus 0 1912
ENSMUST00000163472 Gm17349-201 protein_coding Mus_musculus 0 359

Loading