C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin T type 3 (skeletal, fast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381589 TNNT3-002 ENSG00000130595 9606 + 11:1919706-1938706 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverLungMusclePlacentaTestisENST00000381589
Transcript ID Adipose Breast Colon Heart Liver Lung Muscle Placenta Testis
ENST00000381589 23.294±0.00 117.932±117.49 5.050±0.00 6.855±0.00 1.947±0.00 0.777±0.00 325.099±69.67 1.854±0.00 5.867±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_0003FO CIL_0003FO_0002 CGP 11:1889145-1938706
CIL_00048I CIL_00048I_0001 CGP 11:1919562-1984522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IDA skeletal muscle contraction
GO:0003779 IDA actin binding
GO:0005523 IMP tropomyosin binding
GO:0005829 TAS cytosol
GO:0005861 IDA:IEA troponin complex
GO:0006200 IDA ATP catabolic process
GO:0006942 IDA regulation of striated muscle contraction
GO:0030049 TAS muscle filament sliding
GO:0030172 IPI troponin C binding
GO:0030899 IDA calcium-dependent ATPase activity
GO:0031013 IPI troponin I binding
GO:0043462 IDA regulation of ATPase activity
GO:0048306 IDA calcium-dependent protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105955 Tnnt3-008 protein_coding Mus_musculus 0 931
ENSMUST00000105952 Tnnt3-007 protein_coding Mus_musculus 0 904
ENSMUST00000105954 Tnnt3-005 protein_coding Mus_musculus 0 865
ENSMUST00000074187 Tnnt3-201 protein_coding Mus_musculus 0 859
ENSMUST00000105945 Tnnt3-016 protein_coding Mus_musculus 0 859
ENSMUST00000105957 Tnnt3-203 protein_coding Mus_musculus 0 848
ENSMUST00000169299 Tnnt3-204 protein_coding Mus_musculus 0 846
ENSMUST00000105944 Tnnt3-017 protein_coding Mus_musculus 0 846
ENSMUST00000105953 Tnnt3-002 protein_coding Mus_musculus 0 841
ENSMUST00000105942 Tnnt3-010 protein_coding Mus_musculus 0 837
ENSMUST00000105949 Tnnt3-009 protein_coding Mus_musculus 0 837
ENSMUST00000179658 Tnnt3-004 protein_coding Mus_musculus 0 837
ENSMUST00000078497 Tnnt3-001 protein_coding Mus_musculus 0 837
ENSMUST00000105950 Tnnt3-202 protein_coding Mus_musculus 0 819
ENSMUST00000180152 Tnnt3-205 protein_coding Mus_musculus 0 806
ENSMUST00000105946 Tnnt3-014 protein_coding Mus_musculus 0 802
ENSMUST00000105941 Tnnt3-013 protein_coding Mus_musculus 0 760
ENSMUST00000105947 Tnnt3-011 protein_coding Mus_musculus 0 760
ENSMUST00000105948 Tnnt3-015 protein_coding Mus_musculus 0 747
ENSMUST00000105943 Tnnt3-012 protein_coding Mus_musculus 0 737
ENSMUST00000105958 Tnnt3-006 protein_coding Mus_musculus 0 737
ENSMUST00000125649 Tnnt3-003 processed_transcript Mus_musculus 0 732
ENSMUST00000146804 Tnnt3-021 protein_coding Mus_musculus 0 704
ENSMUST00000153262 Tnnt3-019 retained_intron Mus_musculus 0 643

Loading