C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cystin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381813 CYS1-001 ENSG00000205795 9606 - 2:10056780-10080411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381813
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381813 0.540±0.00 3.808±0.00 1.026±0.00 1.091±0.95 0.703±0.50 0.621±0.41 71.205±0.00 0.386±0.00 3.587±0.00 0.077±0.00 3.993±3.88 0.141±0.02 1.572±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DF CIL_0007DF_0001 CGP 2:10042849-10080944
CIL_0007DI CIL_0007DI_0001 CGP 2:10056780-10131419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005929 IEA cilium
GO:0005930 IEA axoneme
GO:0036064 IEA ciliary basal body
GO:0045121 IEA membrane raft
GO:0048839 IEA inner ear development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074163 Cys1-001 nonsense_mediated_decay Mus_musculus 4e-34 150
ENSMUST00000173145 Cys1-004 nonsense_mediated_decay Mus_musculus 2e-34 150
ENSMUST00000163514 Cys1-005 nonsense_mediated_decay Mus_musculus 2e-34 150
ENSMUST00000189849 Cys1-202 protein_coding Mus_musculus 4e-34 150
ENSMUST00000186602 Cys1-201 protein_coding Mus_musculus 4e-34 150

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