C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382751 URB1-001 ENSG00000142207 9606 - 21:32311018-32393026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382751
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382751 3.152±0.00 3.013±0.00 1.972±1.24 3.967±2.08 1.405±1.05 1.682±1.11 1.653±0.66 1.116±0.28 2.003±0.00 3.004±2.25 7.365±2.12 1.985±0.70 4.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I6 CIL_0001I6_0001 CGP 21:32268219-32314784
CIL_0001FB CIL_0001FB_0001 CGP 21:32291813-32393026
CIL_0003KX CIL_0003KX_0001 CGP 21:32311018-32515397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005730 NAS nucleolus
GO:0008150 ND biological_process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140920 Urb1-002 protein_coding Mus_musculus 0 4876
ENSMUST00000142955 Urb1-001 retained_intron Mus_musculus 0 1838
ENSMUST00000140158 Urb1-005 retained_intron Mus_musculus 0 616
ENSMUST00000140942 Urb1-003 retained_intron Mus_musculus 0 588

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