C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002VH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000009285-ENSDARG00000009594 CGP 7955 19:19373861-19395415
GeneTranscriptPositionBiotype
ENSDARG00000009285 (rpl15)
ribosomal protein L15 		ENSDART00000034837 (rpl15-201) 19374690-19381496 protein_coding
ENSDART00000133626 (rpl15-002) 19373929-19381494 protein_coding
ENSDART00000141397 (rpl15-001) 19373861-19381684 protein_coding
ENSDART00000143066 (rpl15-004) 19373887-19375190 retained_intron
ENSDART00000143913 (rpl15-003) 19373869-19381495 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002VH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174748-ENSG00000174738 CGP 9606 3:23916545-23980618
GeneTranscriptPositionBiotype
ENSG00000174738 (NR1D2)
nuclear receptor subfamily 1, group D, member 2 		ENST00000312521 (NR1D2-001) 23945260-23980618 protein_coding
ENST00000383773 (NR1D2-002) 23945375-23978497 nonsense_mediated_decay
ENST00000468700 (NR1D2-004) 23954626-23962334 retained_intron
ENST00000472780 (NR1D2-005) 23964764-23968013 retained_intron
ENST00000492552 (NR1D2-003) 23946121-23977543 processed_transcript
ENSG00000174748 (RPL15)
ribosomal protein L15 		ENST00000307839 (RPL15-001) 23916545-23920977 protein_coding
ENST00000354811 (RPL15-007) 23917705-23919551 protein_coding
ENST00000412097 (RPL15-011) 23917147-23919411 protein_coding
ENST00000413699 (RPL15-002) 23917131-23920820 protein_coding
ENST00000415719 (RPL15-013) 23917148-23919547 protein_coding
ENST00000422218 (RPL15-009) 23916591-23919286 protein_coding
ENST00000434031 (RPL15-014) 23916979-23919409 protein_coding
ENST00000435882 (RPL15-005) 23917148-23919791 protein_coding
ENST00000436146 (RPL15-008) 23917847-23920847 nonsense_mediated_decay
ENST00000456530 (RPL15-201) 23916804-23923692 protein_coding
ENST00000465786 (RPL15-006) 23917148-23919552 retained_intron
ENST00000490223 (RPL15-004) 23917148-23919551 retained_intron
ENST00000611050 (RPL15-202) 23916804-23920856 protein_coding

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VH_0001ENSDARG00000009285ENSDART00000034837ENSDART00000133626ENSDART00000141397ENSDART00000143066ENSDART00000143913CIL_0002VH_0002ENSG00000174738ENST00000312521ENST00000383773ENST00000468700ENST00000472780ENST00000492552ENSG00000174748ENST00000307839ENST00000354811ENST00000412097ENST00000413699ENST00000415719ENST00000422218ENST00000434031ENST00000435882ENST00000436146ENST00000456530ENST00000465786ENST00000490223ENST00000611050
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VH_0001ENSDARG00000009285ENSDART00000034837ENSDART00000133626ENSDART00000141397ENSDART00000143066CIL_0002VH_0002ENSG00000174738ENST00000312521ENST00000383773ENST00000492552ENSG00000174748ENST00000307839ENST00000413699ENST00000415719ENST00000422218ENST00000434031ENST00000435882ENST00000436146
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000009285 ENSDART00000034837 N/A N/A N/A 158.112±134.30 N/A N/A 690.938±608.19 34.241±29.72 916.408±0.00 N/A 1114.030±0.00 N/A N/A N/A
ENSDART00000133626 N/A N/A N/A 19.348±0.00 N/A N/A 197.315±0.00 102.753±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141397 N/A N/A N/A 42.002±22.91 N/A N/A 297.890±361.44 41.910±0.00 333.204±0.00 N/A 176.197±0.00 N/A N/A N/A
ENSDART00000143066 N/A N/A N/A 9.065±0.40 N/A N/A 5.359±2.58 4.363±0.72 N/A N/A N/A N/A N/A N/A
ENSDART00000143913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174738 ENST00000312521 1.666±0.00 6.512±0.00 N/A 14.413±0.50 2.563±0.00 4.529±0.00 5.464±4.44 0.618±0.00 5.707±5.20 4.226±0.47 9.797±0.00 4.857±3.05 0.970±0.05 5.888±1.62
ENST00000383773 N/A N/A 1.685±0.00 N/A 1.996±0.00 N/A N/A 3.946±0.00 N/A N/A 1.230±0.00 2.141±0.00 N/A N/A
ENST00000468700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492552 N/A N/A N/A N/A 3.532±0.00 2.510±0.00 3.962±0.00 4.835±0.00 N/A N/A 4.513±0.00 1.534±0.00 N/A N/A
ENSG00000174748 ENST00000307839 N/A N/A 4.789±0.00 N/A 7.524±0.00 N/A N/A N/A 11.872±0.00 N/A N/A 42.548±0.00 N/A 30.726±0.00
ENST00000354811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413699 186.567±0.00 213.783±0.00 11.019±0.00 133.988±78.22 96.321±70.46 137.481±107.10 36.662±26.30 78.639±50.36 47.029±9.16 137.875±97.84 61.695±53.30 127.884±100.50 110.934±20.33 110.427±50.63
ENST00000415719 N/A N/A N/A N/A N/A N/A 76.500±0.00 N/A 100.909±0.00 N/A 167.609±0.00 570.384±0.00 441.484±65.12 N/A
ENST00000422218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 308.139±0.00 465.726±0.00 317.561±0.00
ENST00000434031 N/A N/A 19.245±0.00 N/A 71.337±0.00 47.472±0.00 N/A N/A N/A 55.055±0.00 42.885±0.00 61.487±0.00 N/A N/A
ENST00000435882 N/A N/A 14.208±0.00 N/A 25.412±0.00 32.494±0.00 19.888±0.00 51.482±0.00 57.929±0.00 N/A 36.591±0.00 45.196±0.00 116.687±0.00 N/A
ENST00000436146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 94.842±25.11 40.799±0.00 N/A
ENST00000456530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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