C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00025B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000009594-ENSDARG00000021163 CGP 7955 19:19388563-19646473
GeneTranscriptPositionBiotype
ENSDARG00000021163 (thrb)
thyroid hormone receptor beta 		ENSDART00000017869 (thrb-001) 19506361-19646473 nonsense_mediated_decay
ENSDART00000142170 (thrb-002) 19507033-19515035 processed_transcript
ENSDART00000151766 (thrb-003) 19505437-19646460 protein_coding
CIL_00025B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174738-ENSG00000151090 CGP 9606 3:23945260-24495282
GeneTranscriptPositionBiotype
ENSG00000151090 (THRB)
thyroid hormone receptor, beta 		ENST00000280696 (THRB-003) 24122838-24165595 protein_coding
ENST00000356447 (THRB-001) 24118210-24494822 protein_coding
ENST00000396671 (THRB-201) 24117160-24494822 protein_coding
ENST00000413780 (THRB-011) 24146718-24495005 protein_coding
ENST00000415021 (THRB-005) 24152408-24494731 protein_coding
ENST00000416420 (THRB-004) 24122208-24494811 protein_coding
ENST00000418247 (THRB-012) 24190168-24494803 protein_coding
ENST00000428492 (THRB-009) 24190154-24494771 protein_coding
ENST00000431815 (THRB-008) 24152431-24494797 protein_coding
ENST00000447414 (THRB-010) 24152463-24495282 protein_coding
ENST00000447875 (THRB-006) 24152408-24494751 protein_coding
ENST00000453729 (THRB-002) 24152410-24494962 protein_coding
ENSG00000174738 (NR1D2)
nuclear receptor subfamily 1, group D, member 2 		ENST00000312521 (NR1D2-001) 23945260-23980618 protein_coding
ENST00000383773 (NR1D2-002) 23945375-23978497 nonsense_mediated_decay
ENST00000468700 (NR1D2-004) 23954626-23962334 retained_intron
ENST00000472780 (NR1D2-005) 23964764-23968013 retained_intron
ENST00000492552 (NR1D2-003) 23946121-23977543 processed_transcript
ENSG00000224074 (LINC00691)
long intergenic non-protein coding RNA 691 		ENST00000432505 (LINC00691-002) 24099974-24103238 lincRNA
ENST00000436123 (LINC00691-003) 24096269-24103223 lincRNA
ENSG00000224822 (THRB-IT1)
THRB intronic transcript 1 (non-protein coding) 		ENST00000425296 (THRB-IT1-001) 24455136-24459434 sense_intronic
ENSG00000228791 (THRB-AS1)
THRB antisense RNA 1 		ENST00000432368 (THRB-AS1-001) 24494087-24500342 antisense
ENST00000438096 (THRB-AS1-002) 24494308-24497181 lincRNA
ENST00000594183 (THRB-AS1-003) 24498625-24499618 lincRNA
ENST00000608893 (THRB-AS1-004) 24495957-24499618 lincRNA
ENST00000609230 (THRB-AS1-005) 24496184-24499618 lincRNA
ENST00000610876 (THRB-AS1-007) 24495377-24499580 antisense
ENST00000620754 (THRB-AS1-006) 24494436-24499580 antisense
ENSG00000229756 (RPL31P20)
ribosomal protein L31 pseudogene 20 		ENST00000449593 (RPL31P20-001) 24430748-24431107 processed_pseudogene
ENSG00000242109 (NPM1P23)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 23 		ENST00000440193 (NPM1P23-001) 24096512-24097360 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025B_0001ENSDARG00000021163ENSDART00000017869ENSDART00000142170ENSDART00000151766CIL_00025B_0002ENSG00000151090ENST00000280696ENST00000356447ENST00000396671ENST00000413780ENST00000415021ENST00000416420ENST00000418247ENST00000428492ENST00000431815ENST00000447414ENST00000447875ENST00000453729ENSG00000174738ENST00000312521ENST00000383773ENST00000468700ENST00000472780ENST00000492552ENSG00000224074ENST00000432505ENST00000436123ENSG00000224822ENST00000425296ENSG00000228791ENST00000432368ENST00000438096ENST00000594183ENST00000608893ENST00000609230ENST00000610876ENST00000620754ENSG00000229756ENST00000449593ENSG00000242109ENST00000440193
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00025B_0001ENSDARG00000021163ENSDART00000017869ENSDART00000151766CIL_00025B_0002ENSG00000151090ENST00000280696ENST00000356447ENST00000396671ENST00000415021ENSG00000174738ENST00000312521ENST00000383773ENST00000492552ENSG00000224074ENST00000432505ENST00000436123ENSG00000224822ENST00000425296ENSG00000228791ENST00000432368ENST00000438096ENST00000594183ENST00000608893ENST00000609230ENST00000620754ENSG00000229756ENST00000449593ENSG00000242109ENST00000440193
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021163 ENSDART00000017869 N/A N/A N/A 4.149±0.00 N/A N/A 1.857±0.00 N/A 0.370±0.00 N/A N/A N/A N/A N/A
ENSDART00000142170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151766 N/A N/A N/A 6.908±0.00 N/A N/A 3.958±2.89 7.364±0.00 0.446±0.00 N/A 0.992±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151090 ENST00000280696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.00
ENST00000356447 4.082±0.00 1.485±0.00 2.179±0.00 6.359±0.00 4.059±2.27 1.895±0.14 2.018±0.90 3.138±0.28 2.869±0.28 1.418±0.57 1.962±1.25 0.809±0.22 1.479±0.23 1.348±0.00
ENST00000396671 N/A N/A N/A 1.344±0.00 0.353±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENST00000413780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.068±0.00 N/A N/A N/A
ENST00000416420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174738 ENST00000312521 1.666±0.00 6.512±0.00 N/A 14.413±0.50 2.563±0.00 4.529±0.00 5.464±4.44 0.618±0.00 5.707±5.20 4.226±0.47 9.797±0.00 4.857±3.05 0.970±0.05 5.888±1.62
ENST00000383773 N/A N/A 1.685±0.00 N/A 1.996±0.00 N/A N/A 3.946±0.00 N/A N/A 1.230±0.00 2.141±0.00 N/A N/A
ENST00000468700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492552 N/A N/A N/A N/A 3.532±0.00 2.510±0.00 3.962±0.00 4.835±0.00 N/A N/A 4.513±0.00 1.534±0.00 N/A N/A
ENSG00000224074 ENST00000432505 0.011±0.00 0.048±0.00 N/A 0.017±0.00 0.027±0.00 0.005±0.00 0.033±0.03 0.011±0.00 0.017±0.00 0.005±0.00 N/A N/A N/A 1.194±0.68
ENST00000436123 N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224822 ENST00000425296 0.121±0.00 0.334±0.00 N/A 0.278±0.05 0.355±0.19 0.338±0.15 0.272±0.03 0.683±0.40 0.339±0.31 0.469±0.43 0.052±0.02 0.135±0.17 0.049±0.02 0.103±0.04
ENSG00000228791 ENST00000432368 0.030±0.00 0.074±0.00 N/A 0.229±0.00 0.096±0.00 0.041±0.00 0.106±0.00 N/A 0.067±0.02 0.029±0.00 N/A 0.086±0.01 0.115±0.03 0.131±0.04
ENST00000438096 0.050±0.00 0.080±0.00 N/A N/A N/A N/A N/A N/A 0.113±0.00 0.019±0.00 N/A 0.111±0.04 N/A N/A
ENST00000594183 0.041±0.00 N/A 0.225±0.00 N/A N/A N/A 0.098±0.00 N/A N/A 0.341±0.00 N/A 0.058±0.02 0.049±0.00 0.116±0.01
ENST00000608893 N/A N/A N/A N/A 0.291±0.00 N/A N/A 0.292±0.00 0.368±0.00 0.046±0.00 0.211±0.00 N/A N/A N/A
ENST00000609230 N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A
ENST00000610876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.316±0.00 N/A N/A N/A
ENSG00000229756 ENST00000449593 N/A N/A 0.217±0.00 1.369±0.00 N/A 1.691±0.00 N/A 5.017±0.00 0.197±0.00 0.119±0.00 N/A N/A N/A N/A
ENSG00000242109 ENST00000440193 0.087±0.00 0.076±0.00 N/A 0.120±0.00 N/A 0.012±0.00 N/A 0.013±0.00 N/A N/A 0.322±0.00 N/A N/A N/A

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