C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000388835 KRT18-002 ENSG00000111057 9606 + 12:52948964-52952901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000388835
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000388835 7.190±0.00 4.135±0.00 2.929±0.00 25.047±0.00 32.800±4.94 42.380±0.00 82.351±74.60 99.876±95.47 0.785±0.00 188.216±210.92 772.871±0.00 9.241±2.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038V CIL_00038V_0001 CGP 12:52837804-52949954
CIL_0006T8 CIL_0006T8_0001 CGP 12:52897187-52952901
CIL_0006TF CIL_0006TF_0001 CGP 12:52948871-53042209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005815 IDA microtubule organizing center
GO:0005882 IDA:IEA intermediate filament
GO:0007049 IEA cell cycle
GO:0009653 TAS anatomical structure morphogenesis
GO:0016032 IEA viral process
GO:0033209 IEA tumor necrosis factor-mediated signaling pathway
GO:0034451 IDA centriolar satellite
GO:0043000 IDA Golgi to plasma membrane CFTR protein transport
GO:0043066 IDA negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045095 IDA keratin filament
GO:0045104 IDA intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery
GO:0097110 IPI scaffold protein binding
GO:0097191 IEA extrinsic apoptotic signaling pathway
GO:0097284 IEA hepatocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023803 Krt18-201 protein_coding Mus_musculus 0 1227
ENSMUST00000188261 RP24-79D2.1-001 processed_pseudogene Mus_musculus 0 610

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