C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000388837 KRT18-201 ENSG00000111057 9606 + 12:52948871-52952900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000388837
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000388837 3.621±0.00 9.546±0.00 0.640±0.51 34.365±10.55 45.842±10.70 0.953±0.00 61.556±24.06 11.338±0.00 10.708±0.00 0.654±0.36 63.883±59.75 785.368±228.96 13.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038V CIL_00038V_0001 CGP 12:52837804-52949954
CIL_0006T8 CIL_0006T8_0001 CGP 12:52897187-52952901
CIL_0006TF CIL_0006TF_0001 CGP 12:52948871-53042209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005815 IDA microtubule organizing center
GO:0005882 IDA:IEA intermediate filament
GO:0007049 IEA cell cycle
GO:0009653 TAS anatomical structure morphogenesis
GO:0016032 IEA viral process
GO:0034451 IDA centriolar satellite
GO:0043000 IDA Golgi to plasma membrane CFTR protein transport
GO:0043066 IDA negative regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045095 IDA keratin filament
GO:0045104 IDA intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023803 Krt18-201 protein_coding Mus_musculus 0 1221
ENSMUST00000188261 RP24-79D2.1-001 processed_pseudogene Mus_musculus 0 610

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