C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box, brain, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389554 TBR1-001 ENSG00000136535 9606 + 2:161416094-161425870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungMuscleENST00000389554
Transcript ID Brain Kidney Lung Muscle
ENST00000389554 33.345±0.00 0.019±0.00 0.048±0.00 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L1 CIL_0005L1_0001 CGP 2:161308038-161425870
CIL_0003AH CIL_0003AH_0001 CGP 2:161416094-161985282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IEA axon guidance
GO:0007420 TAS brain development
GO:0010092 IEA specification of organ identity
GO:0010468 IEA regulation of gene expression
GO:0010975 IEA regulation of neuron projection development
GO:0021902 IEA commitment of neuronal cell to specific neuron type in forebrain
GO:0030182 IEA neuron differentiation
GO:0030902 IEA hindbrain development
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048934 Tbr1-001 protein_coding Mus_musculus 0 5334
ENSMUST00000102737 Tbr1-002 protein_coding Mus_musculus 0 1851
ENSMUST00000131538 Tbr1-003 processed_transcript Mus_musculus 0 848
ENSMUST00000136867 Tbr1-004 processed_transcript Mus_musculus 0 292

Loading