C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box, brain, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136535 TBR1 9606 + 2:161416094-161425870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389554 TBR1-001 161416094-161425870 protein_coding
  ENST00000410035 TBR1-002 161417895-161424286 protein_coding
  ENST00000411412 TBR1-006 161417779-161423776 protein_coding
  ENST00000463544 TBR1-005 161416331-161423885 retained_intron
  ENST00000477804 TBR1-003 161419210-161423685 processed_transcript
  ENST00000489530 TBR1-004 161419511-161423455 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLungMuscleOvaryPlacentaENST00000389554ENST00000411412ENST00000463544
Transcript ID Adipose Brain Breast Heart Kidney Lung Muscle Ovary Placenta
ENST00000389554 N/A 33.345±0.00 N/A N/A 0.019±0.00 0.048±0.00 0.010±0.00 N/A N/A
ENST00000411412 N/A N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A
ENST00000463544 0.010±0.00 N/A 0.034±0.02 0.002±0.00 N/A 0.003±0.00 N/A N/A 0.006±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L1 CIL_0005L1_0001 CGP 2:161308038-161425870
CIL_0003AH CIL_0003AH_0001 CGP 2:161416094-161985282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IEA axon guidance
GO:0007420 TAS brain development
GO:0010092 IEA specification of organ identity
GO:0010468 IEA regulation of gene expression
GO:0010975 IEA regulation of neuron projection development
GO:0021902 IEA commitment of neuronal cell to specific neuron type in forebrain
GO:0030182 IEA neuron differentiation
GO:0030902 IEA hindbrain development
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004712 tbr1b T-box, brain, 1b protein_coding Danio_rerio
ENSMUSG00000035033 Tbr1 T-box brain gene 1 protein_coding Mus_musculus

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