C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aryl hydrocarbon receptor nuclear translocator-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389707 ARNTL-001 ENSG00000133794 9606 + 11:13277798-13387266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverPlacentaTestisENST00000389707
Transcript ID Adipose Brain Colon Liver Placenta Testis
ENST00000389707 1.055±0.00 1.520±0.06 2.675±0.00 0.354±0.00 0.593±0.03 2.911±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PI CIL_0003PI_0001 CGP 11:13009577-13387266
CIL_0003PJ CIL_0003PJ_0001 CGP 11:13276652-13463297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0000982 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0001047 ISS core promoter binding
GO:0003677 IDA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0006355 ISS:IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007283 ISS spermatogenesis
GO:0007623 TAS circadian rhythm
GO:0017162 IPI aryl hydrocarbon receptor binding
GO:0032007 ISS negative regulation of TOR signaling
GO:0032922 ISS circadian regulation of gene expression
GO:0033391 ISS chromatoid body
GO:0042634 IMP regulation of hair cycle
GO:0042753 ISS positive regulation of circadian rhythm
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043565 ISS sequence-specific DNA binding
GO:0045599 ISS negative regulation of fat cell differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0050767 ISS regulation of neurogenesis
GO:0050796 ISS regulation of insulin secretion
GO:0051726 ISS regulation of cell cycle
GO:0051775 IDA response to redox state
GO:0051879 IDA Hsp90 protein binding
GO:0070888 IDA E-box binding
GO:0090263 ISS positive regulation of canonical Wnt signaling pathway
GO:0090403 ISS oxidative stress-induced premature senescence
GO:2000074 ISS regulation of type B pancreatic cell development
GO:2000323 ISS negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 ISS regulation of cellular senescence
GO:2001016 ISS positive regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047321 Arntl-201 protein_coding Mus_musculus 0 3373
ENSDART00000051823 arntl1b-201 protein_coding Danio_rerio 0 667
ENSDART00000098259 arntl1b-202 protein_coding Danio_rerio 0 667
ENSDART00000139227 arntl1b-001 protein_coding Danio_rerio 0 667
ENSDART00000104523 arntl1b-002 protein_coding Danio_rerio 0 667

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