C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aryl hydrocarbon receptor nuclear translocator-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047321 Arntl-201 ENSMUSG00000055116 10090 + 7:113207465-113314122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047321
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047321 5.006±1.48 2.680±1.22 1.029±0.15 4.801±0.51 3.360±0.50 8.475±1.27 3.666±1.54 3.182±0.34 4.550±2.05 5.194±1.99 5.367±3.37 2.742±0.86 4.365±1.95 1.148±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PI CIL_0003PI_0002 CGP 7:112953962-113314122
CIL_0003PJ CIL_0003PJ_0002 CGP 7:113207465-113369392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 IDA protein import into nucleus, translocation
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0000982 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0001047 IDA core promoter binding
GO:0001077 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001190 IDA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 ISA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0007283 IMP spermatogenesis
GO:0007623 IMP circadian rhythm
GO:0008134 ISA transcription factor binding
GO:0016604 IDA nuclear body
GO:0017162 IEA aryl hydrocarbon receptor binding
GO:0032007 IMP negative regulation of TOR signaling
GO:0032922 IMP circadian regulation of gene expression
GO:0033391 IDA chromatoid body
GO:0042176 IDA regulation of protein catabolic process
GO:0042634 ISS regulation of hair cycle
GO:0042753 IMP positive regulation of circadian rhythm
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043425 IPI bHLH transcription factor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045599 IMP negative regulation of fat cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0050767 IMP regulation of neurogenesis
GO:0050796 IMP regulation of insulin secretion
GO:0051726 IMP regulation of cell cycle
GO:0051775 IDA response to redox state
GO:0051879 IEA Hsp90 protein binding
GO:0070888 IDA E-box binding
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway
GO:0090403 IMP oxidative stress-induced premature senescence
GO:2000074 IMP regulation of type B pancreatic cell development
GO:2000323 IMP negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 IMP regulation of cellular senescence
GO:2001016 IMP positive regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389707 ARNTL-001 protein_coding Homo_sapiens 0 3373
ENST00000401424 ARNTL-003 protein_coding Homo_sapiens 0 3227
ENST00000403290 ARNTL-004 protein_coding Homo_sapiens 0 3393
ENST00000403482 ARNTL-005 protein_coding Homo_sapiens 0 3164
ENST00000403510 ARNTL-002 protein_coding Homo_sapiens 0 3206
ENST00000472842 ARNTL-006 retained_intron Homo_sapiens 0 1362
ENST00000480685 ARNTL-009 retained_intron Homo_sapiens 0 237
ENST00000482049 ARNTL-008 protein_coding Homo_sapiens 0 303
ENST00000497429 ARNTL-007 processed_transcript Homo_sapiens 0 616
ENST00000524392 ARNTL-014 nonsense_mediated_decay Homo_sapiens 0 1637
ENST00000527998 ARNTL-019 protein_coding Homo_sapiens 0 300
ENST00000529388 ARNTL-022 protein_coding Homo_sapiens 0 566
ENST00000529390 ARNTL-013 retained_intron Homo_sapiens 0 723
ENST00000529825 ARNTL-017 protein_coding Homo_sapiens 0 265
ENST00000530357 ARNTL-018 protein_coding Homo_sapiens 0 612
ENST00000533520 ARNTL-020 protein_coding Homo_sapiens 0 411
ENST00000534102 ARNTL-012 retained_intron Homo_sapiens 0 431
ENST00000534544 ARNTL-015 protein_coding Homo_sapiens 0 233

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