C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389912 COX16-001 ENSG00000133983 9606 - 14:70325081-70359731 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyLungMuscleOvaryPlacentaENST00000389912
Transcript ID Adrenal Bladder Brain Breast Kidney Lung Muscle Ovary Placenta
ENST00000389912 4.816±0.00 4.091±0.00 5.546±2.57 8.435±0.00 10.668±0.00 3.104±0.00 5.661±0.00 7.114±0.91 4.518±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J1 CIL_0006J1_0002 CGP 14:70044217-70359731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031966 IEA mitochondrial membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002757 Cox16-001 protein_coding Mus_musculus 0 357
ENSMUST00000166664 Gm20498-002 protein_coding Mus_musculus 0 291
ENSMUST00000171237 Cox16-007 processed_transcript Mus_musculus 0 291
ENSMUST00000110340 Cox16-003 protein_coding Mus_musculus 0 215
ENSMUST00000169124 Cox16-005 protein_coding Mus_musculus 0 213
ENSMUST00000168463 Cox16-009 protein_coding Mus_musculus 0 213
ENSMUST00000166723 Cox16-008 protein_coding Mus_musculus 0 213
ENSMUST00000169912 Cox16-002 retained_intron Mus_musculus 6e-37 159
ENSMUST00000164386 Gm20498-001 protein_coding Mus_musculus 1e-33 148
ENSMUST00000171459 Gm20498-004 nonsense_mediated_decay Mus_musculus 5e-33 147
ENSMUST00000163282 Cox16-004 processed_transcript Mus_musculus 5e-33 147
ENSMUST00000167819 Cox16-006 processed_transcript Mus_musculus 2e-32 145
ENSMUST00000170958 Gm20498-005 processed_transcript Mus_musculus 8e-31 139
ENSMUST00000168961 Gm20498-006 processed_transcript Mus_musculus 7e-22 110
ENSMUST00000110339 Gm20498-003 processed_transcript Mus_musculus 2e-17 95
ENSMUST00000116234 Arl1-001 protein_coding Mus_musculus 0.0001 53

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