C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006J1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004931-ENSDARG00000039136 CGP 7955 13:36598377-36720907
GeneTranscriptPositionBiotype
ENSDARG00000004931 (slc8a3)
solute carrier family 8 (sodium-calcium exchanger), member 3 		ENSDART00000100204 (slc8a3-001) 36598377-36666460 protein_coding
ENSDARG00000039136 (cox16)
COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) 		ENSDART00000057164 (cox16-001) 36713493-36720907 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006J1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100678-ENSG00000133983 CGP 9606 14:70044217-70359731
GeneTranscriptPositionBiotype
ENSG00000100678 (SLC8A3)
solute carrier family 8 (sodium/calcium exchanger), member 3 		ENST00000216568 (SLC8A3-006) 70044255-70080206 protein_coding
ENST00000356921 (SLC8A3-001) 70044217-70189070 protein_coding
ENST00000357887 (SLC8A3-201) 70044220-70189070 protein_coding
ENST00000381269 (SLC8A3-003) 70044217-70189070 protein_coding
ENST00000394330 (SLC8A3-007) 70044419-70080180 protein_coding
ENST00000494208 (SLC8A3-002) 70044217-70189070 nonsense_mediated_decay
ENST00000528359 (SLC8A3-005) 70045947-70168484 protein_coding
ENST00000533541 (SLC8A3-008) 70046075-70080180 protein_coding
ENST00000533899 (SLC8A3-009) 70059106-70060939 processed_transcript
ENST00000534137 (SLC8A3-004) 70045947-70168484 protein_coding
ENSG00000133983 (COX16)
COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) 		ENST00000389912 (COX16-001) 70325081-70359731 protein_coding
ENST00000554366 (COX16-002) 70326068-70328230 processed_transcript
ENST00000555601 (COX16-003) 70326282-70359590 nonsense_mediated_decay
ENST00000557612 (COX16-004) 70326068-70359700 processed_transcript
ENSG00000258422 (RP11-486O13.2)
 ENST00000554008 (RP11-486O13.2-002) 70223765-70230108 antisense
ENST00000555198 (RP11-486O13.2-001) 70223776-70230181 antisense
ENST00000555480 (RP11-486O13.2-003) 70187123-70230187 antisense
ENSG00000258644 (SYNJ2BP-COX16)
SYNJ2BP-COX16 readthrough 		ENST00000555276 (SYNJ2BP-COX16-001) 70326352-70416984 protein_coding
ENST00000617124 (SYNJ2BP-COX16-005) 70326352-70416984 protein_coding
ENST00000617196 (SYNJ2BP-COX16-003) 70326350-70416984 protein_coding
ENST00000618385 (SYNJ2BP-COX16-004) 70359582-70416984 nonsense_mediated_decay
ENST00000621525 (SYNJ2BP-COX16-002) 70326064-70417074 protein_coding
ENSG00000259033 (RP11-718G2.5)
 ENST00000553791 (RP11-718G2.5-001) 70275296-70291859 lincRNA
ENSG00000270610 (RP11-486O13.3)
 ENST00000603975 (RP11-486O13.3-001) 70234495-70235095 processed_pseudogene
ENSG00000274330 (RP11-486O13.5)
 ENST00000619152 (RP11-486O13.5-001) 70230224-70232426 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J1_0001ENSDARG00000004931ENSDART00000100204ENSDARG00000039136ENSDART00000057164CIL_0006J1_0002ENSG00000100678ENST00000216568ENST00000356921ENST00000357887ENST00000381269ENST00000394330ENST00000494208ENST00000528359ENST00000533541ENST00000533899ENST00000534137ENSG00000133983ENST00000389912ENST00000554366ENST00000555601ENST00000557612ENSG00000258422ENST00000554008ENST00000555198ENST00000555480ENSG00000258644ENST00000555276ENST00000617124ENST00000617196ENST00000618385ENST00000621525ENSG00000259033ENST00000553791ENSG00000270610ENST00000603975ENSG00000274330ENST00000619152
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006J1_0001ENSDARG00000004931ENSDART00000100204ENSDARG00000039136ENSDART00000057164CIL_0006J1_0002ENSG00000100678ENST00000216568ENST00000356921ENST00000381269ENST00000394330ENST00000494208ENST00000533541ENST00000534137ENSG00000133983ENST00000389912ENST00000557612ENSG00000258422ENST00000554008ENST00000555480ENSG00000258644ENST00000555276ENSG00000259033ENST00000553791ENSG00000270610ENST00000603975ENSG00000274330ENST00000619152
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004931 ENSDART00000100204 N/A N/A N/A 1.349±0.33 N/A N/A 0.159±0.11 0.342±0.00 N/A N/A 0.812±0.00 N/A N/A N/A
ENSDARG00000039136 ENSDART00000057164 N/A N/A N/A 7.210±0.83 N/A N/A 7.845±2.16 6.580±1.35 0.854±0.00 N/A 3.910±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100678 ENST00000216568 N/A 0.118±0.00 N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A
ENST00000356921 N/A N/A N/A 1.677±0.78 0.092±0.00 N/A N/A N/A 0.419±0.00 N/A 1.105±0.00 N/A N/A 0.110±0.00
ENST00000357887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.436±0.00 0.013±0.00 N/A 0.071±0.03
ENST00000394330 N/A N/A N/A 0.651±0.00 N/A N/A 0.047±0.00 N/A 0.010±0.00 0.184±0.07 N/A 0.027±0.00 N/A N/A
ENST00000494208 0.077±0.00 N/A N/A 0.798±0.00 N/A 0.025±0.01 0.020±0.00 0.006±0.00 N/A 0.253±0.00 1.695±1.13 0.013±0.00 0.022±0.01 N/A
ENST00000528359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533541 N/A N/A N/A N/A 0.060±0.00 N/A 0.022±0.00 N/A 0.010±0.00 N/A N/A N/A 0.019±0.01 0.017±0.00
ENST00000533899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534137 N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.154±0.00 N/A 0.016±0.00 N/A 0.123±0.00
ENSG00000133983 ENST00000389912 N/A 4.816±0.00 4.091±0.00 5.546±2.57 8.435±0.00 N/A N/A 10.668±0.00 N/A 3.104±0.00 5.661±0.00 7.114±0.91 4.518±1.62 N/A
ENST00000554366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557612 17.456±0.00 15.634±0.00 N/A 14.006±0.00 29.723±0.00 22.437±0.00 23.939±0.00 N/A 27.866±0.00 16.668±0.00 17.112±0.00 9.956±0.00 8.543±0.61 28.145±0.00
ENSG00000258422 ENST00000554008 0.415±0.00 0.697±0.00 N/A 0.515±0.00 0.820±0.00 0.124±0.00 0.347±0.00 0.449±0.00 0.178±0.14 0.301±0.00 N/A 0.067±0.00 0.072±0.00 N/A
ENST00000555198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555480 N/A N/A 0.782±0.00 0.368±0.00 N/A N/A N/A N/A N/A N/A 0.396±0.00 0.034±0.00 N/A N/A
ENSG00000258644 ENST00000555276 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.925±0.00 N/A 33.135±0.00 30.483±0.00 25.387±0.00
ENST00000617124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259033 ENST00000553791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.222±0.67
ENSG00000270610 ENST00000603975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.067±1.01
ENSG00000274330 ENST00000619152 0.047±0.00 N/A N/A 0.135±0.06 N/A N/A N/A N/A 0.019±0.00 N/A 0.393±0.36 0.011±0.00 0.016±0.00 1.538±0.00

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