C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: testis-specific serine kinase 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000390666 TSSK1B-001 ENSG00000212122 9606 - 5:113432554-113435031 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000390666
Transcript ID Adipose Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000390666 0.007±0.00 0.015±0.00 0.026±0.01 0.006±0.00 0.015±0.01 0.006±0.00 0.062±0.03 0.037±0.02 20.285±5.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UM CIL_0004UM_0001 CGP 5:112976702-113488830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004672 IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IDA:IEA ATP binding
GO:0006468 IDA:IEA protein phosphorylation
GO:0007275 IEA multicellular organismal development
GO:0007286 ISS spermatid development
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031410 IEA cytoplasmic vesicle
GO:0031514 ISS motile cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055374 Tssk2-201 protein_coding Mus_musculus 0 828
ENSMUST00000155611 Dgcr2-006 retained_intron Mus_musculus 7e-38 163
ENSMUST00000117082 Dgcr2-001 protein_coding Mus_musculus 7e-38 163
ENSMUST00000066127 Dgcr2-003 protein_coding Mus_musculus 7e-38 163
ENSMUST00000012152 Dgcr2-004 protein_coding Mus_musculus 7e-38 163
ENSMUST00000117945 Dgcr2-002 protein_coding Mus_musculus 7e-38 163
ENSMUST00000135229 Dgcr2-005 retained_intron Mus_musculus 7e-38 163
ENSMUST00000150068 Gm20518-001 nonsense_mediated_decay Mus_musculus 7e-38 163

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