C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DiGeorge syndrome critical region gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117945 Dgcr2-002 ENSMUSG00000003166 10090 - 16:17840355-17891660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117945 16.038±2.67 8.032±0.69 11.215±0.19 19.028±5.26 13.215±3.89 15.478±2.76 11.126±0.41 15.801±1.91 10.138±3.10 14.647±1.21 3.701±0.71 22.177±7.61 8.298±2.84 7.051±2.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004IH CIL_0004IH_0002 CGP 16:17835276-17891671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007155 IEA cell adhesion
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0042493 IDA response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263196 DGCR2-001 protein_coding Homo_sapiens 0 1934
ENST00000389262 DGCR2-002 nonsense_mediated_decay Homo_sapiens 0 1186
ENST00000390666 TSSK1B-001 protein_coding Homo_sapiens 7e-38 163
ENST00000467659 DGCR2-003 retained_intron Homo_sapiens 0 580
ENST00000473832 DGCR2-004 processed_transcript Homo_sapiens 0 568
ENST00000537045 DGCR2-201 protein_coding Homo_sapiens 0 1624
ENST00000545799 DGCR2-202 protein_coding Homo_sapiens 0 1934
ENST00000608548 DGCR2-005 processed_transcript Homo_sapiens 0 568
ENST00000615747 DGCR2-203 protein_coding Homo_sapiens 0 1151

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