C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DiGeorge syndrome critical region gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000012152 Dgcr2-004 ENSMUSG00000003166 10090 - 16:17840355-17891693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012152 23.980±5.95 34.764±6.19 10.494±0.83 22.708±1.72 23.387±7.38 37.889±3.37 6.786±0.52 17.791±2.94 12.250±5.66 25.417±3.68 4.506±1.07 39.526±17.26 7.059±3.00 23.962±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091
CIL_0004IH CIL_0004IH_0002 CGP 16:17835276-17891671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IDA membrane
GO:0030246 IEA carbohydrate binding
GO:0042493 IDA response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263196 DGCR2-001 protein_coding Homo_sapiens 0 1986
ENST00000389262 DGCR2-002 nonsense_mediated_decay Homo_sapiens 0 1186
ENST00000390666 TSSK1B-001 protein_coding Homo_sapiens 7e-38 163
ENST00000467659 DGCR2-003 retained_intron Homo_sapiens 0 580
ENST00000473832 DGCR2-004 processed_transcript Homo_sapiens 0 571
ENST00000537045 DGCR2-201 protein_coding Homo_sapiens 0 1676
ENST00000545799 DGCR2-202 protein_coding Homo_sapiens 0 1964
ENST00000608548 DGCR2-005 processed_transcript Homo_sapiens 0 568
ENST00000615747 DGCR2-203 protein_coding Homo_sapiens 0 1181

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