C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392253 AC007256.5-001 ENSG00000213090 9606 - 2:201410544-201413308 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392253 0.104±0.00 0.177±0.00 0.250±0.00 0.071±0.00 0.343±0.28 0.198±0.19 0.188±0.09 0.081±0.03 0.094±0.09 0.344±0.34 0.083±0.00 0.076±0.10 0.011±0.00 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0001 VISTA 2:201132231-201734391
CIL_0000JJ CIL_0000JJ_0002 CGP 2:201377207-201480846
CIL_00020Q CIL_00020Q_0001 CGP 2:201387858-201619178

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174252 Scyl2-001 protein_coding Mus_musculus 0 3000
ENSMUST00000092227 Scyl2-002 protein_coding Mus_musculus 0 2985
ENSMUST00000105294 Scyl2-003 processed_transcript Mus_musculus 0 1515
ENSMUST00000174492 Scyl2-004 protein_coding Mus_musculus 0 957
ENSMUST00000173526 Scyl2-007 retained_intron Mus_musculus 0 508
ENSMUST00000174575 Scyl2-006 retained_intron Mus_musculus 0 427

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