C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000082146-ENSG00000155754 CGP 9606 2:201387858-201619178
GeneTranscriptPositionBiotype
ENSG00000082146 (STRADB)
STE20-related kinase adaptor beta 		ENST00000194530 (STRADB-001) 201451669-201480846 protein_coding
ENST00000392249 (STRADB-003) 201451796-201480846 protein_coding
ENST00000415688 (STRADB-009) 201478150-201480523 protein_coding
ENST00000447698 (STRADB-005) 201451734-201474707 nonsense_mediated_decay
ENST00000458269 (STRADB-006) 201387858-201478113 protein_coding
ENST00000466770 (STRADB-010) 201479142-201480348 retained_intron
ENST00000468123 (STRADB-008) 201475671-201478567 retained_intron
ENST00000484098 (STRADB-011) 201472857-201477725 retained_intron
ENST00000488196 (STRADB-004) 201451734-201458823 processed_transcript
ENST00000498648 (STRADB-007) 201474622-201478191 retained_intron
ENSG00000115993 (TRAK2)
trafficking protein, kinesin binding 2 		ENST00000332624 (TRAK2-001) 201377207-201451579 protein_coding
ENST00000430254 (TRAK2-002) 201395128-201451500 protein_coding
ENST00000440597 (TRAK2-004) 201420417-201433554 protein_coding
ENST00000451703 (TRAK2-005) 201419197-201451453 processed_transcript
ENST00000486291 (TRAK2-003) 201397606-201399510 retained_intron
ENST00000620184 (TRAK2-201) 201379852-201451611 protein_coding
ENSG00000155754 (ALS2CR11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 		ENST00000286195 (ALS2CR11-001) 201487425-201619175 protein_coding
ENST00000439140 (ALS2CR11-003) 201487608-201619175 protein_coding
ENST00000439802 (ALS2CR11-002) 201487525-201619154 protein_coding
ENST00000450242 (ALS2CR11-005) 201535004-201619178 protein_coding
ENST00000482942 (ALS2CR11-006) 201487801-201511827 processed_transcript
ENSG00000202008 (Y_RNA)
Y RNA 		ENST00000365138 (Y_RNA.1-521) 201423513-201423604 misc_RNA
ENSG00000213090 (AC007256.5)
 ENST00000392253 (AC007256.5-001) 201410544-201413308 processed_pseudogene
ENSG00000224299 (AC007282.6)
 ENST00000434543 (AC007282.6-001) 201550524-201551049 unprocessed_pseudogene
ENSG00000224590 (AC007163.10)
 ENST00000452205 (AC007163.10-001) 201553688-201554031 unprocessed_pseudogene
ENSG00000227736 (AC007163.9)
 ENST00000454456 (AC007163.9-001) 201552859-201553612 unprocessed_pseudogene
ENSG00000227841 (MTND5P31)
MT-ND5 pseudogene 31 		ENST00000419366 (MTND5P31-001) 201556892-201558265 unprocessed_pseudogene
ENSG00000234842 (AC007163.8)
 ENST00000436962 (AC007163.8-001) 201549631-201550307 unprocessed_pseudogene
ENSG00000249177 (MTND4P29)
MT-ND4 pseudogene 29 		ENST00000503122 (MTND4P29-001) 201554384-201556051 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00020Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026027-ENSMUSG00000072295 CGP 10090 1:58973522-59094900
GeneTranscriptPositionBiotype
ENSMUSG00000026027 (Stradb)
STE20-related kinase adaptor beta 		ENSMUST00000027185 (Stradb-001) 58973522-58995715 protein_coding
ENSMUST00000114296 (Stradb-004) 58973522-58991512 protein_coding
ENSMUST00000123301 (Stradb-002) 58973522-58994997 nonsense_mediated_decay
ENSMUST00000123965 (Stradb-006) 58973522-58981475 retained_intron
ENSMUST00000147637 (Stradb-005) 58973522-58987847 retained_intron
ENSMUST00000152318 (Stradb-008) 58991058-58994359 protein_coding
ENSMUST00000153990 (Stradb-003) 58973522-58995122 nonsense_mediated_decay
ENSMUSG00000047383 (Als2cr11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) 		ENSMUST00000054653 (Als2cr11-001) 58997315-59006218 unprocessed_pseudogene
ENSMUSG00000072295 (Als2cr11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) 		ENSMUST00000097080 (Als2cr11-001) 59050506-59094900 protein_coding
ENSMUST00000149784 (Als2cr11-002) 59069820-59084523 processed_transcript
ENSMUSG00000099752 (RP24-535E21.1)
predicted gene 29018 		ENSMUST00000188707 (RP24-535E21.1-001) 59014224-59059481 antisense
ENSMUST00000191356 (RP24-535E21.1-002) 59036055-59037906 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020Q_0001ENSG00000082146ENST00000194530ENST00000392249ENST00000415688ENST00000468123ENSG00000115993ENST00000332624ENST00000430254ENST00000620184ENSG00000155754ENST00000286195ENST00000439140ENST00000439802ENST00000450242ENSG00000202008ENST00000365138ENSG00000213090ENST00000392253ENSG00000224299ENST00000434543ENSG00000224590ENST00000452205ENSG00000227736ENST00000454456ENSG00000227841ENST00000419366ENSG00000234842ENST00000436962ENSG00000249177ENST00000503122CIL_00020Q_0002ENSMUSG00000026027ENSMUST00000027185ENSMUST00000114296ENSMUST00000123301ENSMUST00000147637ENSMUST00000152318ENSMUST00000153990ENSMUSG00000047383ENSMUST00000054653ENSMUSG00000072295ENSMUST00000097080ENSMUST00000149784ENSMUSG00000099752ENSMUST00000188707ENSMUST00000191356
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000082146 ENST00000194530 N/A N/A N/A N/A 10.519±0.00 4.509±0.00 15.309±0.00 6.841±1.73 6.037±0.00 6.959±0.00 9.583±3.16 4.917±1.26 7.809±0.61 N/A
ENST00000392249 N/A N/A N/A N/A N/A N/A N/A 3.003±0.00 N/A N/A N/A 4.492±0.00 6.919±0.00 5.902±0.00
ENST00000415688 N/A N/A N/A N/A N/A N/A N/A N/A 8.188±0.00 N/A N/A N/A N/A N/A
ENST00000447698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.478±0.00 N/A N/A N/A
ENST00000484098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115993 ENST00000332624 15.782±0.00 10.055±0.00 N/A 7.956±4.41 7.072±3.45 9.338±3.79 16.694±10.63 7.709±7.13 3.883±1.39 6.953±0.00 2.237±1.33 3.849±0.85 6.090±1.08 6.499±4.26
ENST00000430254 N/A N/A N/A N/A N/A N/A N/A 2.786±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620184 N/A N/A 3.788±0.00 5.202±0.00 4.074±0.00 5.622±0.00 14.341±3.80 N/A 5.768±0.00 9.011±0.00 1.887±0.00 3.185±0.00 N/A 2.867±0.00
ENSG00000155754 ENST00000286195 0.087±0.00 0.045±0.00 N/A 0.145±0.00 0.233±0.00 N/A 0.359±0.10 N/A N/A 0.086±0.00 N/A 0.043±0.00 0.024±0.00 10.901±0.00
ENST00000439140 0.011±0.00 0.039±0.00 0.025±0.00 0.065±0.00 0.040±0.00 0.001±0.00 0.069±0.01 0.021±0.00 0.011±0.00 N/A N/A 0.090±0.03 0.007±0.00 6.338±0.82
ENST00000439802 N/A N/A 0.054±0.00 0.562±0.00 N/A 0.039±0.00 0.837±0.00 0.047±0.00 0.142±0.00 0.268±0.25 0.174±0.00 0.182±0.05 0.048±0.00 N/A
ENST00000450242 N/A N/A N/A N/A 0.104±0.01 0.013±0.00 0.583±0.00 N/A N/A N/A N/A 0.172±0.18 0.044±0.00 N/A
ENST00000482942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202008 ENST00000365138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00
ENSG00000213090 ENST00000392253 0.104±0.00 0.177±0.00 0.250±0.00 0.071±0.00 0.343±0.28 0.198±0.19 0.188±0.09 0.081±0.03 0.094±0.09 0.344±0.34 0.083±0.00 0.076±0.10 0.011±0.00 0.035±0.00
ENSG00000224299 ENST00000434543 N/A N/A N/A 0.060±0.00 0.110±0.00 N/A N/A N/A N/A 0.058±0.00 N/A 0.031±0.00 N/A 0.264±0.19
ENSG00000224590 ENST00000452205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.274±0.00 N/A N/A
ENSG00000227736 ENST00000454456 N/A N/A N/A N/A 0.286±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A 0.136±0.08
ENSG00000227841 ENST00000419366 N/A N/A N/A 0.029±0.01 0.017±0.00 N/A 0.241±0.00 N/A 0.172±0.00 N/A N/A 0.067±0.04 N/A 0.071±0.04
ENSG00000234842 ENST00000436962 0.052±0.00 N/A N/A 0.060±0.00 0.383±0.00 N/A 0.093±0.00 N/A 0.102±0.00 0.074±0.00 N/A 0.138±0.10 N/A 0.118±0.08
ENSG00000249177 ENST00000503122 N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 0.067±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026027 ENSMUST00000027185 3.807±0.77 N/A 0.632±0.07 3.552±1.18 2.929±0.81 1.526±0.34 3.482±1.48 3.569±0.88 2.948±1.00 1.319±0.65 4.984±0.00 1.861±0.47 1.491±0.30 2.300±0.40
ENSMUST00000114296 N/A 16.861±3.93 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.286±1.30 2.368±0.00 N/A
ENSMUST00000123301 7.228±2.03 6.618±1.25 3.588±1.00 10.601±5.08 8.588±2.40 5.113±0.97 11.114±1.24 10.848±1.53 10.934±2.75 4.333±0.70 20.241±1.81 5.226±1.48 6.045±3.44 3.974±1.55
ENSMUST00000123965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147637 N/A N/A N/A 0.588±0.00 N/A N/A N/A N/A N/A N/A N/A 0.591±0.21 N/A 0.151±0.00
ENSMUST00000152318 N/A N/A N/A 11.153±0.00 N/A N/A N/A N/A N/A N/A N/A 5.776±0.00 9.953±0.00 N/A
ENSMUST00000153990 N/A N/A 1.883±0.65 6.354±0.16 2.137±0.00 N/A 2.866±0.18 N/A 3.790±0.86 N/A 22.256±2.96 1.919±0.17 3.187±2.29 N/A
ENSMUSG00000047383 ENSMUST00000054653 0.014±0.00 N/A 0.002±0.00 0.013±0.00 N/A N/A 0.025±0.01 0.015±0.00 0.003±0.00 N/A N/A 0.007±0.00 0.003±0.00 24.177±0.00
ENSMUSG00000072295 ENSMUST00000097080 N/A N/A N/A 0.022±0.01 N/A N/A N/A 0.050±0.02 0.006±0.00 0.042±0.00 0.017±0.00 0.026±0.00 0.019±0.01 65.904±69.09
ENSMUST00000149784 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099752 ENSMUST00000188707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.891±0.36
ENSMUST00000191356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.255±0.00

Loading