C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000082146-ENSG00000155754 CGP 9606 2:201387858-201619178
GeneTranscriptPositionBiotype
ENSG00000082146 (STRADB)
STE20-related kinase adaptor beta 		ENST00000194530 (STRADB-001) 201451669-201480846 protein_coding
ENST00000392249 (STRADB-003) 201451796-201480846 protein_coding
ENST00000415688 (STRADB-009) 201478150-201480523 protein_coding
ENST00000447698 (STRADB-005) 201451734-201474707 nonsense_mediated_decay
ENST00000458269 (STRADB-006) 201387858-201478113 protein_coding
ENST00000466770 (STRADB-010) 201479142-201480348 retained_intron
ENST00000468123 (STRADB-008) 201475671-201478567 retained_intron
ENST00000484098 (STRADB-011) 201472857-201477725 retained_intron
ENST00000488196 (STRADB-004) 201451734-201458823 processed_transcript
ENST00000498648 (STRADB-007) 201474622-201478191 retained_intron
ENSG00000115993 (TRAK2)
trafficking protein, kinesin binding 2 		ENST00000332624 (TRAK2-001) 201377207-201451579 protein_coding
ENST00000430254 (TRAK2-002) 201395128-201451500 protein_coding
ENST00000440597 (TRAK2-004) 201420417-201433554 protein_coding
ENST00000451703 (TRAK2-005) 201419197-201451453 processed_transcript
ENST00000486291 (TRAK2-003) 201397606-201399510 retained_intron
ENST00000620184 (TRAK2-201) 201379852-201451611 protein_coding
ENSG00000155754 (ALS2CR11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 		ENST00000286195 (ALS2CR11-001) 201487425-201619175 protein_coding
ENST00000439140 (ALS2CR11-003) 201487608-201619175 protein_coding
ENST00000439802 (ALS2CR11-002) 201487525-201619154 protein_coding
ENST00000450242 (ALS2CR11-005) 201535004-201619178 protein_coding
ENST00000482942 (ALS2CR11-006) 201487801-201511827 processed_transcript
ENSG00000202008 (Y_RNA)
Y RNA 		ENST00000365138 (Y_RNA.1-521) 201423513-201423604 misc_RNA
ENSG00000213090 (AC007256.5)
 ENST00000392253 (AC007256.5-001) 201410544-201413308 processed_pseudogene
ENSG00000224299 (AC007282.6)
 ENST00000434543 (AC007282.6-001) 201550524-201551049 unprocessed_pseudogene
ENSG00000224590 (AC007163.10)
 ENST00000452205 (AC007163.10-001) 201553688-201554031 unprocessed_pseudogene
ENSG00000227736 (AC007163.9)
 ENST00000454456 (AC007163.9-001) 201552859-201553612 unprocessed_pseudogene
ENSG00000227841 (MTND5P31)
MT-ND5 pseudogene 31 		ENST00000419366 (MTND5P31-001) 201556892-201558265 unprocessed_pseudogene
ENSG00000234842 (AC007163.8)
 ENST00000436962 (AC007163.8-001) 201549631-201550307 unprocessed_pseudogene
ENSG00000249177 (MTND4P29)
MT-ND4 pseudogene 29 		ENST00000503122 (MTND4P29-001) 201554384-201556051 unprocessed_pseudogene
CIL_00020Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026027-ENSMUSG00000072295 CGP 10090 1:58973522-59094900
GeneTranscriptPositionBiotype
ENSMUSG00000026027 (Stradb)
STE20-related kinase adaptor beta 		ENSMUST00000027185 (Stradb-001) 58973522-58995715 protein_coding
ENSMUST00000114296 (Stradb-004) 58973522-58991512 protein_coding
ENSMUST00000123301 (Stradb-002) 58973522-58994997 nonsense_mediated_decay
ENSMUST00000123965 (Stradb-006) 58973522-58981475 retained_intron
ENSMUST00000147637 (Stradb-005) 58973522-58987847 retained_intron
ENSMUST00000152318 (Stradb-008) 58991058-58994359 protein_coding
ENSMUST00000153990 (Stradb-003) 58973522-58995122 nonsense_mediated_decay
ENSMUSG00000047383 (Als2cr11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) 		ENSMUST00000054653 (Als2cr11-001) 58997315-59006218 unprocessed_pseudogene
ENSMUSG00000072295 (Als2cr11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) 		ENSMUST00000097080 (Als2cr11-001) 59050506-59094900 protein_coding
ENSMUST00000149784 (Als2cr11-002) 59069820-59084523 processed_transcript
ENSMUSG00000099752 (RP24-535E21.1)
predicted gene 29018 		ENSMUST00000188707 (RP24-535E21.1-001) 59014224-59059481 antisense
ENSMUST00000191356 (RP24-535E21.1-002) 59036055-59037906 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020Q_0001ENSG00000082146ENST00000194530ENST00000392249ENST00000415688ENST00000447698ENST00000458269ENST00000466770ENST00000468123ENST00000484098ENST00000488196ENST00000498648ENSG00000115993ENST00000332624ENST00000430254ENST00000440597ENST00000451703ENST00000486291ENST00000620184ENSG00000155754ENST00000286195ENST00000439140ENST00000439802ENST00000450242ENST00000482942ENSG00000202008ENST00000365138ENSG00000213090ENST00000392253ENSG00000224299ENST00000434543ENSG00000224590ENST00000452205ENSG00000227736ENST00000454456ENSG00000227841ENST00000419366ENSG00000234842ENST00000436962ENSG00000249177ENST00000503122CIL_00020Q_0002ENSMUSG00000026027ENSMUST00000027185ENSMUST00000114296ENSMUST00000123301ENSMUST00000123965ENSMUST00000147637ENSMUST00000152318ENSMUST00000153990ENSMUSG00000047383ENSMUST00000054653ENSMUSG00000072295ENSMUST00000097080ENSMUST00000149784ENSMUSG00000099752ENSMUST00000188707ENSMUST00000191356
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020Q_0001ENSG00000082146ENST00000194530ENST00000392249ENST00000415688ENST00000468123ENSG00000115993ENST00000332624ENST00000430254ENST00000620184ENSG00000155754ENST00000286195ENST00000439140ENST00000439802ENST00000450242ENSG00000202008ENST00000365138ENSG00000213090ENST00000392253ENSG00000224299ENST00000434543ENSG00000224590ENST00000452205ENSG00000227736ENST00000454456ENSG00000227841ENST00000419366ENSG00000234842ENST00000436962ENSG00000249177ENST00000503122CIL_00020Q_0002ENSMUSG00000026027ENSMUST00000027185ENSMUST00000114296ENSMUST00000123301ENSMUST00000147637ENSMUST00000152318ENSMUST00000153990ENSMUSG00000047383ENSMUST00000054653ENSMUSG00000072295ENSMUST00000097080ENSMUST00000149784ENSMUSG00000099752ENSMUST00000188707ENSMUST00000191356
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000082146 ENST00000194530 N/A N/A N/A N/A 10.519±0.00 4.509±0.00 15.309±0.00 6.841±1.73 6.037±0.00 6.959±0.00 9.583±3.16 4.917±1.26 7.809±0.61 N/A
ENST00000392249 N/A N/A N/A N/A N/A N/A N/A 3.003±0.00 N/A N/A N/A 4.492±0.00 6.919±0.00 5.902±0.00
ENST00000415688 N/A N/A N/A N/A N/A N/A N/A N/A 8.188±0.00 N/A N/A N/A N/A N/A
ENST00000447698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.478±0.00 N/A N/A N/A
ENST00000484098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115993 ENST00000332624 15.782±0.00 10.055±0.00 N/A 7.956±4.41 7.072±3.45 9.338±3.79 16.694±10.63 7.709±7.13 3.883±1.39 6.953±0.00 2.237±1.33 3.849±0.85 6.090±1.08 6.499±4.26
ENST00000430254 N/A N/A N/A N/A N/A N/A N/A 2.786±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620184 N/A N/A 3.788±0.00 5.202±0.00 4.074±0.00 5.622±0.00 14.341±3.80 N/A 5.768±0.00 9.011±0.00 1.887±0.00 3.185±0.00 N/A 2.867±0.00
ENSG00000155754 ENST00000286195 0.087±0.00 0.045±0.00 N/A 0.145±0.00 0.233±0.00 N/A 0.359±0.10 N/A N/A 0.086±0.00 N/A 0.043±0.00 0.024±0.00 10.901±0.00
ENST00000439140 0.011±0.00 0.039±0.00 0.025±0.00 0.065±0.00 0.040±0.00 0.001±0.00 0.069±0.01 0.021±0.00 0.011±0.00 N/A N/A 0.090±0.03 0.007±0.00 6.338±0.82
ENST00000439802 N/A N/A 0.054±0.00 0.562±0.00 N/A 0.039±0.00 0.837±0.00 0.047±0.00 0.142±0.00 0.268±0.25 0.174±0.00 0.182±0.05 0.048±0.00 N/A
ENST00000450242 N/A N/A N/A N/A 0.104±0.01 0.013±0.00 0.583±0.00 N/A N/A N/A N/A 0.172±0.18 0.044±0.00 N/A
ENST00000482942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202008 ENST00000365138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00
ENSG00000213090 ENST00000392253 0.104±0.00 0.177±0.00 0.250±0.00 0.071±0.00 0.343±0.28 0.198±0.19 0.188±0.09 0.081±0.03 0.094±0.09 0.344±0.34 0.083±0.00 0.076±0.10 0.011±0.00 0.035±0.00
ENSG00000224299 ENST00000434543 N/A N/A N/A 0.060±0.00 0.110±0.00 N/A N/A N/A N/A 0.058±0.00 N/A 0.031±0.00 N/A 0.264±0.19
ENSG00000224590 ENST00000452205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.274±0.00 N/A N/A
ENSG00000227736 ENST00000454456 N/A N/A N/A N/A 0.286±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A 0.136±0.08
ENSG00000227841 ENST00000419366 N/A N/A N/A 0.029±0.01 0.017±0.00 N/A 0.241±0.00 N/A 0.172±0.00 N/A N/A 0.067±0.04 N/A 0.071±0.04
ENSG00000234842 ENST00000436962 0.052±0.00 N/A N/A 0.060±0.00 0.383±0.00 N/A 0.093±0.00 N/A 0.102±0.00 0.074±0.00 N/A 0.138±0.10 N/A 0.118±0.08
ENSG00000249177 ENST00000503122 N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 0.067±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026027 ENSMUST00000027185 3.807±0.77 N/A 0.632±0.07 3.552±1.18 2.929±0.81 1.526±0.34 3.482±1.48 3.569±0.88 2.948±1.00 1.319±0.65 4.984±0.00 1.861±0.47 1.491±0.30 2.300±0.40
ENSMUST00000114296 N/A 16.861±3.93 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.286±1.30 2.368±0.00 N/A
ENSMUST00000123301 7.228±2.03 6.618±1.25 3.588±1.00 10.601±5.08 8.588±2.40 5.113±0.97 11.114±1.24 10.848±1.53 10.934±2.75 4.333±0.70 20.241±1.81 5.226±1.48 6.045±3.44 3.974±1.55
ENSMUST00000123965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147637 N/A N/A N/A 0.588±0.00 N/A N/A N/A N/A N/A N/A N/A 0.591±0.21 N/A 0.151±0.00
ENSMUST00000152318 N/A N/A N/A 11.153±0.00 N/A N/A N/A N/A N/A N/A N/A 5.776±0.00 9.953±0.00 N/A
ENSMUST00000153990 N/A N/A 1.883±0.65 6.354±0.16 2.137±0.00 N/A 2.866±0.18 N/A 3.790±0.86 N/A 22.256±2.96 1.919±0.17 3.187±2.29 N/A
ENSMUSG00000047383 ENSMUST00000054653 0.014±0.00 N/A 0.002±0.00 0.013±0.00 N/A N/A 0.025±0.01 0.015±0.00 0.003±0.00 N/A N/A 0.007±0.00 0.003±0.00 24.177±0.00
ENSMUSG00000072295 ENSMUST00000097080 N/A N/A N/A 0.022±0.01 N/A N/A N/A 0.050±0.02 0.006±0.00 0.042±0.00 0.017±0.00 0.026±0.00 0.019±0.01 65.904±69.09
ENSMUST00000149784 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099752 ENSMUST00000188707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.891±0.36
ENSMUST00000191356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.255±0.00

Loading