C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000JJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078872-ENSDARG00000088225 CGP 7955 6:4048461-4118565
GeneTranscriptPositionBiotype
ENSDARG00000078872 (trak2)
trafficking protein, kinesin binding 2 		ENSDART00000112204 (trak2-201) 4048461-4090070 protein_coding
ENSDARG00000088225 (STRADB)
STE20-related kinase adaptor beta 		ENSDART00000130642 (STRADB-201) 4109491-4118565 protein_coding
CIL_0000JJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115993-ENSG00000082146 CGP 9606 2:201377207-201480846
GeneTranscriptPositionBiotype
ENSG00000082146 (STRADB)
STE20-related kinase adaptor beta 		ENST00000194530 (STRADB-001) 201451669-201480846 protein_coding
ENST00000392249 (STRADB-003) 201451796-201480846 protein_coding
ENST00000415688 (STRADB-009) 201478150-201480523 protein_coding
ENST00000447698 (STRADB-005) 201451734-201474707 nonsense_mediated_decay
ENST00000458269 (STRADB-006) 201387858-201478113 protein_coding
ENST00000466770 (STRADB-010) 201479142-201480348 retained_intron
ENST00000468123 (STRADB-008) 201475671-201478567 retained_intron
ENST00000484098 (STRADB-011) 201472857-201477725 retained_intron
ENST00000488196 (STRADB-004) 201451734-201458823 processed_transcript
ENST00000498648 (STRADB-007) 201474622-201478191 retained_intron
ENSG00000115993 (TRAK2)
trafficking protein, kinesin binding 2 		ENST00000332624 (TRAK2-001) 201377207-201451579 protein_coding
ENST00000430254 (TRAK2-002) 201395128-201451500 protein_coding
ENST00000440597 (TRAK2-004) 201420417-201433554 protein_coding
ENST00000451703 (TRAK2-005) 201419197-201451453 processed_transcript
ENST00000486291 (TRAK2-003) 201397606-201399510 retained_intron
ENST00000620184 (TRAK2-201) 201379852-201451611 protein_coding
ENSG00000202008 (Y_RNA)
Y RNA 		ENST00000365138 (Y_RNA.1-521) 201423513-201423604 misc_RNA
ENSG00000213090 (AC007256.5)
 ENST00000392253 (AC007256.5-001) 201410544-201413308 processed_pseudogene
CIL_0000JJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026028-ENSMUSG00000026027 CGP 10090 1:58900449-58995715
GeneTranscriptPositionBiotype
ENSMUSG00000026027 (Stradb)
STE20-related kinase adaptor beta 		ENSMUST00000027185 (Stradb-001) 58973522-58995715 protein_coding
ENSMUST00000114296 (Stradb-004) 58973522-58991512 protein_coding
ENSMUST00000123301 (Stradb-002) 58973522-58994997 nonsense_mediated_decay
ENSMUST00000123965 (Stradb-006) 58973522-58981475 retained_intron
ENSMUST00000147637 (Stradb-005) 58973522-58987847 retained_intron
ENSMUST00000152318 (Stradb-008) 58991058-58994359 protein_coding
ENSMUST00000153990 (Stradb-003) 58973522-58995122 nonsense_mediated_decay
ENSMUSG00000026028 (Trak2)
trafficking protein, kinesin binding 2 		ENSMUST00000027186 (Trak2-001) 58900449-58973430 protein_coding
ENSMUST00000172685 (Trak2-004) 58903672-58907212 retained_intron
ENSMUST00000173590 (Trak2-005) 58926663-58973429 protein_coding
ENSMUST00000173719 (Trak2-003) 58945902-58973430 retained_intron
ENSMUST00000174120 (Trak2-002) 58903504-58946337 protein_coding
ENSMUST00000174359 (Trak2-006) 58919896-58921697 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000JJ_0001ENSDARG00000078872ENSDART00000112204ENSDARG00000088225ENSDART00000130642CIL_0000JJ_0002ENSG00000082146ENST00000194530ENST00000392249ENST00000415688ENST00000447698ENST00000458269ENST00000466770ENST00000468123ENST00000484098ENST00000488196ENST00000498648ENSG00000115993ENST00000332624ENST00000430254ENST00000440597ENST00000451703ENST00000486291ENST00000620184ENSG00000202008ENST00000365138ENSG00000213090ENST00000392253CIL_0000JJ_0003ENSMUSG00000026027ENSMUST00000027185ENSMUST00000114296ENSMUST00000123301ENSMUST00000123965ENSMUST00000147637ENSMUST00000152318ENSMUST00000153990ENSMUSG00000026028ENSMUST00000027186ENSMUST00000172685ENSMUST00000173590ENSMUST00000173719ENSMUST00000174120ENSMUST00000174359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000JJ_0001ENSDARG00000078872ENSDART00000112204ENSDARG00000088225ENSDART00000130642CIL_0000JJ_0002ENSG00000082146ENST00000194530ENST00000392249ENST00000415688ENST00000468123ENSG00000115993ENST00000332624ENST00000430254ENST00000620184ENSG00000202008ENST00000365138ENSG00000213090ENST00000392253CIL_0000JJ_0003ENSMUSG00000026027ENSMUST00000027185ENSMUST00000114296ENSMUST00000123301ENSMUST00000147637ENSMUST00000152318ENSMUST00000153990ENSMUSG00000026028ENSMUST00000027186ENSMUST00000172685ENSMUST00000173590ENSMUST00000174120
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000078872 ENSDART00000112204 N/A N/A N/A 11.175±0.00 N/A N/A 3.507±2.07 1.692±0.28 0.308±0.00 N/A 2.006±0.00 N/A N/A N/A
ENSDARG00000088225 ENSDART00000130642 N/A N/A N/A N/A N/A N/A 1.311±0.00 0.392±0.00 0.032±0.00 N/A 0.325±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000082146 ENST00000194530 N/A N/A N/A N/A 10.519±0.00 4.509±0.00 15.309±0.00 6.841±1.73 6.037±0.00 6.959±0.00 9.583±3.16 4.917±1.26 7.809±0.61 N/A
ENST00000392249 N/A N/A N/A N/A N/A N/A N/A 3.003±0.00 N/A N/A N/A 4.492±0.00 6.919±0.00 5.902±0.00
ENST00000415688 N/A N/A N/A N/A N/A N/A N/A N/A 8.188±0.00 N/A N/A N/A N/A N/A
ENST00000447698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.478±0.00 N/A N/A N/A
ENST00000484098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115993 ENST00000332624 15.782±0.00 10.055±0.00 N/A 7.956±4.41 7.072±3.45 9.338±3.79 16.694±10.63 7.709±7.13 3.883±1.39 6.953±0.00 2.237±1.33 3.849±0.85 6.090±1.08 6.499±4.26
ENST00000430254 N/A N/A N/A N/A N/A N/A N/A 2.786±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620184 N/A N/A 3.788±0.00 5.202±0.00 4.074±0.00 5.622±0.00 14.341±3.80 N/A 5.768±0.00 9.011±0.00 1.887±0.00 3.185±0.00 N/A 2.867±0.00
ENSG00000202008 ENST00000365138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00
ENSG00000213090 ENST00000392253 0.104±0.00 0.177±0.00 0.250±0.00 0.071±0.00 0.343±0.28 0.198±0.19 0.188±0.09 0.081±0.03 0.094±0.09 0.344±0.34 0.083±0.00 0.076±0.10 0.011±0.00 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026027 ENSMUST00000027185 3.807±0.77 N/A 0.632±0.07 3.552±1.18 2.929±0.81 1.526±0.34 3.482±1.48 3.569±0.88 2.948±1.00 1.319±0.65 4.984±0.00 1.861±0.47 1.491±0.30 2.300±0.40
ENSMUST00000114296 N/A 16.861±3.93 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.286±1.30 2.368±0.00 N/A
ENSMUST00000123301 7.228±2.03 6.618±1.25 3.588±1.00 10.601±5.08 8.588±2.40 5.113±0.97 11.114±1.24 10.848±1.53 10.934±2.75 4.333±0.70 20.241±1.81 5.226±1.48 6.045±3.44 3.974±1.55
ENSMUST00000123965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147637 N/A N/A N/A 0.588±0.00 N/A N/A N/A N/A N/A N/A N/A 0.591±0.21 N/A 0.151±0.00
ENSMUST00000152318 N/A N/A N/A 11.153±0.00 N/A N/A N/A N/A N/A N/A N/A 5.776±0.00 9.953±0.00 N/A
ENSMUST00000153990 N/A N/A 1.883±0.65 6.354±0.16 2.137±0.00 N/A 2.866±0.18 N/A 3.790±0.86 N/A 22.256±2.96 1.919±0.17 3.187±2.29 N/A
ENSMUSG00000026028 ENSMUST00000027186 7.205±1.16 5.806±1.60 6.683±1.14 6.523±1.61 6.615±0.89 4.729±1.65 20.104±2.44 17.954±0.73 20.710±21.87 9.211±0.88 16.431±3.45 5.961±3.27 9.008±4.28 0.848±0.35
ENSMUST00000172685 N/A 10.669±2.12 N/A N/A 7.421±1.78 9.163±1.62 N/A 14.799±0.00 3.178±0.09 9.311±0.41 N/A 6.622±0.83 N/A 1.020±0.00
ENSMUST00000173590 N/A 15.683±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174120 N/A N/A N/A 17.097±0.00 N/A N/A N/A N/A N/A N/A N/A 7.239±0.00 7.297±1.32 0.532±0.00
ENSMUST00000174359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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