C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dynein, light chain, LC8-type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392508 DYNLL1-003 ENSG00000088986 9606 + 12:120496091-120498491 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLiverMuscleOvaryPlacentaENST00000392508
Transcript ID Adrenal Bladder Breast Colon Heart Liver Muscle Ovary Placenta
ENST00000392508 12.540±0.00 3.345±0.00 6.092±0.00 14.290±8.85 10.333±0.00 27.560±0.00 3.692±0.63 31.937±20.10 28.954±7.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0003774 IEA motor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005868 ISS cytoplasmic dynein complex
GO:0005874 IEA microtubule
GO:0005875 IEA microtubule associated complex
GO:0005886 TAS plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006915 TAS apoptotic process
GO:0007017 IEA microtubule-based process
GO:0007292 TAS female gamete generation
GO:0008180 IDA COP9 signalosome
GO:0009653 TAS anatomical structure morphogenesis
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021762 IEP substantia nigra development
GO:0030036 TAS actin cytoskeleton organization
GO:0042326 IDA negative regulation of phosphorylation
GO:0070062 IDA extracellular vesicular exosome
GO:0072686 IDA mitotic spindle
GO:0097193 TAS intrinsic apoptotic signaling pathway
GO:1900740 TAS positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009157 Dynll1-001 protein_coding Mus_musculus 0 706
ENSMUST00000112090 Dynll1-003 protein_coding Mus_musculus 0 616
ENSMUST00000123292 Dynll1-005 processed_transcript Mus_musculus 0 470
ENSMUST00000166459 Gm6788-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000121041 Gm11582-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000125959 Dynll1-002 retained_intron Mus_musculus 0 213
ENSMUST00000127552 Dynll1-004 processed_transcript Mus_musculus 0 211

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