C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication factor C (activator 1) 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086461 Rfc5-001 ENSMUSG00000029363 10090 - 5:117378103-117389047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086461 10.134±2.43 15.449±0.46 8.650±0.75 15.553±2.06 10.641±1.84 11.534±1.18 7.633±0.51 15.088±0.63 11.324±4.13 9.550±1.48 6.356±0.31 12.687±3.52 12.434±6.99 4.439±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005663 IEA DNA replication factor C complex
GO:0006260 IEA DNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315436 WSB2-001 protein_coding Homo_sapiens 1e-36 159
ENST00000392542 RFC5-001 protein_coding Homo_sapiens 0 1142
ENST00000420967 RFC5-004 protein_coding Homo_sapiens 0 350
ENST00000449641 RFC5-006 protein_coding Homo_sapiens 0 558
ENST00000454402 RFC5-002 protein_coding Homo_sapiens 0 1175
ENST00000472603 RFC5-005 retained_intron Homo_sapiens 0 340
ENST00000484086 RFC5-007 protein_coding Homo_sapiens 0 287
ENST00000535092 RFC5-008 protein_coding Homo_sapiens 0 220
ENST00000537315 RFC5-003 protein_coding Homo_sapiens 0 573
ENST00000543153 RFC5-009 processed_transcript Homo_sapiens 0 475
ENST00000544233 WSB2-201 protein_coding Homo_sapiens 9e-37 159

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