C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF3 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392556 TRAF3IP2-201 ENSG00000056972 9606 - 6:111558942-111601214 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392556
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392556 9.308±0.00 3.638±0.00 3.384±0.00 2.571±1.24 2.674±0.06 1.481±0.00 3.846±0.00 0.976±0.43 5.546±3.27 3.689±0.00 9.180±7.04 9.299±0.82 1.445±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0001 VISTA 6:111250485-111855465
CIL_0001OP CIL_0001OP_0002 CGP 6:111299028-111606278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0035556 NAS intracellular signal transduction
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019987 Traf3ip2-001 protein_coding Mus_musculus 0 1480
ENSMUST00000156016 Traf3ip2-003 retained_intron Mus_musculus 0 529
ENSMUST00000155945 Traf3ip2-005 retained_intron Mus_musculus 0 337
ENSMUST00000131629 Traf3ip2-004 processed_transcript Mus_musculus 0 226

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