C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392676 ABCA5-001 ENSG00000154265 9606 - 17:69244311-69327101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaENST00000392676
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000392676 1.300±0.36 0.221±0.00 0.525±0.00 1.360±0.00 0.880±0.67 1.681±0.00 1.079±0.69 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H0 CIL_0006H0_0001 CGP 17:69244311-69543331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005764 ISS lysosome
GO:0005770 ISS late endosome
GO:0005794 IEA Golgi apparatus
GO:0006200 IEA ATP catabolic process
GO:0010745 ISS negative regulation of macrophage derived foam cell differentiation
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0033344 ISS cholesterol efflux
GO:0034375 ISS high-density lipoprotein particle remodeling
GO:0043691 IC reverse cholesterol transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043961 Abca5-001 protein_coding Mus_musculus 0 5491
ENSMUST00000124714 Abca5-002 protein_coding Mus_musculus 0 3986
ENSMUST00000127318 Abca5-005 retained_intron Mus_musculus 0 1168
ENSMUST00000134721 Abca5-004 protein_coding Mus_musculus 0 610
ENSMUST00000148984 Abca5-003 processed_transcript Mus_musculus 0 361

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