C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043961 Abca5-001 ENSMUSG00000018800 10090 - 11:110269369-110337678 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043961 1.346±0.76 0.857±0.32 0.800±0.09 1.100±0.33 0.721±0.20 0.440±0.21 0.679±0.18 0.926±0.27 0.281±0.18 3.385±1.21 1.262±0.00 0.959±0.45 0.499±0.32 2.621±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H0 CIL_0006H0_0002 CGP 11:110269369-110525522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0005794 IEA Golgi apparatus
GO:0006200 IEA ATP catabolic process
GO:0010745 IMP negative regulation of macrophage derived foam cell differentiation
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0033344 IMP cholesterol efflux
GO:0034375 IMP high-density lipoprotein particle remodeling
GO:0043691 IC reverse cholesterol transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392676 ABCA5-001 protein_coding Homo_sapiens 0 5491
ENST00000586811 ABCA5-008 protein_coding Homo_sapiens 0 2015
ENST00000586995 ABCA5-006 nonsense_mediated_decay Homo_sapiens 0 2335
ENST00000587607 ABCA5-002 non_stop_decay Homo_sapiens 0 761
ENST00000588665 ABCA5-009 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000588877 ABCA5-004 protein_coding Homo_sapiens 0 5491
ENST00000589975 ABCA5-012 protein_coding Homo_sapiens 0 521
ENST00000591234 ABCA5-007 nonsense_mediated_decay Homo_sapiens 0 3018
ENST00000592568 ABCA5-011 protein_coding Homo_sapiens 0 409
ENST00000593153 ABCA5-003 protein_coding Homo_sapiens 0 3051
ENST00000593253 ABCA5-005 non_stop_decay Homo_sapiens 0 761

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