C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124714 Abca5-002 ENSMUSG00000018800 10090 - 11:110286819-110337622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryTestisENSMUST00000124714
Transcript ID Adrenal Breast Liver Ovary Testis
ENSMUST00000124714 0.897±0.06 0.306±0.06 0.136±0.00 0.475±0.13 1.438±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H0 CIL_0006H0_0002 CGP 11:110269369-110525522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392676 ABCA5-001 protein_coding Homo_sapiens 0 3986
ENST00000586811 ABCA5-008 protein_coding Homo_sapiens 0 621
ENST00000586995 ABCA5-006 nonsense_mediated_decay Homo_sapiens 0 1439
ENST00000587607 ABCA5-002 non_stop_decay Homo_sapiens 0 761
ENST00000588665 ABCA5-009 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000588877 ABCA5-004 protein_coding Homo_sapiens 0 3986
ENST00000589975 ABCA5-012 protein_coding Homo_sapiens 0 521
ENST00000591234 ABCA5-007 nonsense_mediated_decay Homo_sapiens 0 1513
ENST00000592568 ABCA5-011 protein_coding Homo_sapiens 0 409
ENST00000593153 ABCA5-003 protein_coding Homo_sapiens 0 3051
ENST00000593253 ABCA5-005 non_stop_decay Homo_sapiens 0 761

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