C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, heavy chain (Hc)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393043 CLTC-002 ENSG00000141367 9606 + 17:59619858-59690826 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryENST00000393043
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary
ENST00000393043 47.636±0.00 33.218±0.00 33.759±0.00 6.720±0.00 24.824±0.00 33.060±0.00 8.061±0.00 29.327±14.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000568 CIL_000568_0002 CGP 17:59565525-59696956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0003725 IDA double-stranded RNA binding
GO:0005198 NAS:IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005819 IDA spindle
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006886 NAS:IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006898 IMP receptor-mediated endocytosis
GO:0007067 IMP mitotic nuclear division
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0019901 ISS protein kinase binding
GO:0030118 NAS clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0030136 IDA clathrin-coated vesicle
GO:0030669 TAS clathrin-coated endocytic vesicle membrane
GO:0031623 IMP receptor internalization
GO:0031982 IDA vesicle
GO:0032051 IPI clathrin light chain binding
GO:0032588 TAS trans-Golgi network membrane
GO:0033572 IMP transferrin transport
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0071439 IDA clathrin complex
GO:1900126 IMP negative regulation of hyaluronan biosynthetic process
GO:1903077 IMP negative regulation of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103186 Cltc-001 protein_coding Mus_musculus 0 7271
ENSMUST00000060766 Cltc-006 protein_coding Mus_musculus 0 7125
ENSMUST00000124385 Cltc-002 protein_coding Mus_musculus 0 675
ENSMUST00000133501 Cltc-004 processed_transcript Mus_musculus 0 538
ENSMUST00000141152 Cltc-005 retained_intron Mus_musculus 0 538
ENSMUST00000134999 Cltc-003 processed_transcript Mus_musculus 0 322

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