C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and coiled-coil domain family 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393238 TMCC1-001 ENSG00000172765 9606 - 3:129647792-129880466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393238
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393238 1.107±0.00 1.667±0.00 0.610±0.00 1.284±0.00 1.217±0.04 0.612±0.00 2.640±0.00 3.152±0.00 2.815±0.12 1.150±0.03 3.063±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000315 CIL_000315_0001 CGP 3:129555175-129893576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088896 Tmcc1-001 protein_coding Mus_musculus 0 3439
ENSMUST00000032222 Tmcc1-003 protein_coding Mus_musculus 0 2396
ENSMUST00000172510 Tmcc1-008 protein_coding Mus_musculus 0 2390
ENSMUST00000173110 Tmcc1-004 nonsense_mediated_decay Mus_musculus 0 2276
ENSMUST00000173548 Tmcc1-007 processed_transcript Mus_musculus 0 1029
ENSMUST00000173031 Tmcc1-002 protein_coding Mus_musculus 0 944
ENSMUST00000173140 Tmcc1-009 protein_coding Mus_musculus 0 835
ENSMUST00000172909 Tmcc1-005 nonsense_mediated_decay Mus_musculus 4e-29 135

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