C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000315_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004399-ENSG00000172765 CGP 9606 3:129555175-129893576
GeneTranscriptPositionBiotype
ENSG00000004399 (PLXND1)
plexin D1 		ENST00000324093 (PLXND1-001) 129555175-129606818 protein_coding
ENST00000501038 (PLXND1-003) 129555214-129557034 retained_intron
ENST00000503166 (PLXND1-013) 129563094-129566166 retained_intron
ENST00000504524 (PLXND1-002) 129555214-129558697 retained_intron
ENST00000504689 (PLXND1-018) 129555214-129557223 protein_coding
ENST00000504767 (PLXND1-011) 129570684-129571723 retained_intron
ENST00000504979 (PLXND1-015) 129562473-129563213 retained_intron
ENST00000505237 (PLXND1-006) 129585952-129589527 protein_coding
ENST00000505505 (PLXND1-008) 129574336-129578548 retained_intron
ENST00000505665 (PLXND1-007) 129583631-129586685 nonsense_mediated_decay
ENST00000506979 (PLXND1-014) 129556617-129561056 protein_coding
ENST00000508630 (PLXND1-016) 129558536-129560942 retained_intron
ENST00000511018 (PLXND1-010) 129570872-129571858 retained_intron
ENST00000512744 (PLXND1-005) 129555218-129565991 nonsense_mediated_decay
ENST00000512807 (PLXND1-017) 129559165-129560414 retained_intron
ENST00000514990 (PLXND1-012) 129569189-129571204 retained_intron
ENST00000515191 (PLXND1-009) 129571540-129572982 retained_intron
ENSG00000172765 (TMCC1)
transmembrane and coiled-coil domain family 1 		ENST00000393238 (TMCC1-001) 129647792-129880466 protein_coding
ENST00000426664 (TMCC1-201) 129647794-129893576 protein_coding
ENST00000432054 (TMCC1-002) 129647792-129688732 protein_coding
ENST00000503256 (TMCC1-007) 129848343-129869100 processed_transcript
ENST00000505616 (TMCC1-003) 129671249-129893551 protein_coding
ENST00000505924 (TMCC1-004) 129827756-129893532 retained_intron
ENST00000508729 (TMCC1-010) 129857248-129893321 processed_transcript
ENST00000508869 (TMCC1-012) 129832758-129893551 retained_intron
ENST00000509440 (TMCC1-006) 129857360-129892745 processed_transcript
ENST00000510323 (TMCC1-013) 129654967-129656726 protein_coding
ENST00000510521 (TMCC1-009) 129880309-129893419 processed_transcript
ENST00000512902 (TMCC1-011) 129828451-129893575 processed_transcript
ENST00000513411 (TMCC1-008) 129828019-129867100 protein_coding
ENST00000515024 (TMCC1-005) 129848346-129893576 processed_transcript
ENSG00000202412 (RNY3P13)
RNA, Ro-associated Y3 pseudogene 13 		ENST00000365542 (RNY3P13-201) 129818932-129819033 misc_RNA
ENSG00000203644 (RP11-332M2.1)
 ENST00000366451 (RP11-332M2.1-001) 129847048-129847957 sense_intronic
ENSG00000239437 (RN7SL752P)
RNA, 7SL, cytoplasmic 752, pseudogene 		ENST00000463779 (RN7SL752P-201) 129591349-129591635 misc_RNA
ENSG00000248659 (RP11-263I1.1)
 ENST00000505608 (RP11-263I1.1-001) 129632019-129632492 unprocessed_pseudogene
ENSG00000252786 (RNU6-1142P)
RNA, U6 small nuclear 1142, pseudogene 		ENST00000516977 (RNU6-1142P-201) 129819777-129819876 snRNA
CIL_000315_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030123-ENSMUSG00000030126 CGP 10090 6:115954811-116193486
GeneTranscriptPositionBiotype
ENSMUSG00000030123 (Plxnd1)
plexin D1 		ENSMUST00000015511 (Plxnd1-001) 115954811-115995005 protein_coding
ENSMUST00000123165 (Plxnd1-003) 115955800-115956364 processed_transcript
ENSMUST00000131590 (Plxnd1-002) 115966963-115969426 protein_coding
ENSMUSG00000030126 (Tmcc1)
transmembrane and coiled coil domains 1 		ENSMUST00000032222 (Tmcc1-003) 116021344-116134320 protein_coding
ENSMUST00000088896 (Tmcc1-001) 116018618-116193486 protein_coding
ENSMUST00000172510 (Tmcc1-008) 116021347-116057011 protein_coding
ENSMUST00000172909 (Tmcc1-005) 116043768-116133903 nonsense_mediated_decay
ENSMUST00000173031 (Tmcc1-002) 116131665-116171697 protein_coding
ENSMUST00000173110 (Tmcc1-004) 116021618-116134430 nonsense_mediated_decay
ENSMUST00000173117 (Tmcc1-006) 116043768-116107567 retained_intron
ENSMUST00000173140 (Tmcc1-009) 116043172-116056955 protein_coding
ENSMUST00000173548 (Tmcc1-007) 116043036-116073156 processed_transcript
ENSMUSG00000060214 (Gm8203)
 ENSMUST00000059673 (Gm8203-201) 116173634-116174494 pseudogene
ENSMUSG00000092625 (Gm20404)
predicted gene 20404 		ENSMUST00000174032 (Gm20404-001) 116107651-116127493 processed_transcript
ENSMUSG00000101878 (RP23-374K9.2)
predicted pseudogene 8203 		ENSMUST00000173192 (RP23-374K9.2-001) 116173737-116174123 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000315_0001ENSG00000004399ENST00000324093ENST00000504524ENST00000506979ENST00000508630ENST00000512744ENST00000514990ENSG00000172765ENST00000393238ENST00000426664ENST00000432054ENSG00000202412ENST00000365542ENSG00000203644ENST00000366451ENSG00000239437ENST00000463779ENSG00000248659ENST00000505608ENSG00000252786ENST00000516977CIL_000315_0002ENSMUSG00000030123ENSMUST00000015511ENSMUSG00000030126ENSMUST00000032222ENSMUST00000088896ENSMUST00000172510ENSMUST00000173031ENSMUST00000173110ENSMUST00000173548ENSMUSG00000060214ENSMUST00000059673ENSMUSG00000092625ENSMUST00000174032ENSMUSG00000101878ENSMUST00000173192
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004399 ENST00000324093 29.703±0.00 22.226±0.00 0.725±0.00 3.187±2.25 17.556±14.47 3.779±2.69 4.618±3.47 5.287±2.60 3.138±1.60 10.881±7.53 N/A 6.107±4.65 44.572±11.63 5.810±2.41
ENST00000501038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.00 12.657±1.36 54.648±0.00 8.327±0.00
ENST00000504689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506979 N/A N/A N/A 6.345±0.00 10.732±0.00 5.446±0.00 2.744±0.00 10.376±0.00 6.928±0.00 12.044±0.00 3.777±0.00 7.412±0.00 N/A N/A
ENST00000508630 N/A N/A 6.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512744 N/A N/A N/A N/A 1.560±0.00 N/A N/A 6.170±0.00 4.775±0.00 10.217±0.00 1.027±0.00 7.149±0.00 N/A N/A
ENST00000512807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514990 N/A N/A N/A N/A 4.320±0.00 1.156±0.00 1.807±0.00 N/A N/A 5.303±0.00 N/A N/A N/A N/A
ENST00000515191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172765 ENST00000393238 N/A 1.107±0.00 N/A N/A 1.667±0.00 0.610±0.00 1.284±0.00 1.217±0.04 0.612±0.00 2.640±0.00 3.152±0.00 2.815±0.12 1.150±0.03 3.063±0.91
ENST00000426664 1.205±0.00 0.971±0.00 N/A 2.154±0.00 4.497±0.00 1.487±0.00 2.079±0.00 1.739±0.00 1.005±0.00 1.874±0.00 2.347±0.61 1.953±0.82 N/A 3.887±1.44
ENST00000432054 N/A N/A N/A N/A 0.628±0.00 N/A 0.461±0.00 0.607±0.00 0.395±0.00 0.514±0.00 0.525±0.00 0.815±0.00 N/A N/A
ENST00000503256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202412 ENST00000365542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.510±0.00
ENSG00000203644 ENST00000366451 2.849±0.00 2.999±0.00 0.190±0.00 1.277±0.64 2.285±0.00 2.212±0.00 1.040±0.60 2.523±0.00 1.633±0.82 2.247±0.00 0.590±0.00 2.479±0.48 1.467±0.00 5.618±0.00
ENSG00000239437 ENST00000463779 0.139±0.00 0.292±0.00 N/A 1.057±0.65 0.077±0.00 1.598±1.46 0.928±0.78 1.368±0.76 4.926±0.00 0.596±0.00 0.762±0.00 0.269±0.05 N/A 0.195±0.00
ENSG00000248659 ENST00000505608 N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00
ENSG00000252786 ENST00000516977 N/A 0.602±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030123 ENSMUST00000015511 54.326±6.33 88.186±8.29 8.948±0.04 13.441±5.54 44.082±18.36 15.032±0.85 25.406±3.75 20.637±1.87 5.248±0.93 64.306±8.56 7.074±0.68 62.116±22.05 18.763±10.34 1.736±0.62
ENSMUST00000123165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030126 ENSMUST00000032222 2.662±0.08 1.524±0.58 1.586±0.18 N/A 3.683±0.63 3.099±1.05 2.122±0.15 1.717±0.18 2.047±1.07 3.355±0.00 3.946±0.48 2.502±1.01 6.010±3.82 38.629±13.34
ENSMUST00000088896 5.850±1.02 2.714±0.29 3.783±0.25 8.985±5.80 5.040±0.85 4.720±0.26 2.426±0.51 2.988±0.22 1.626±0.27 6.046±1.47 2.145±0.35 6.964±0.99 2.065±0.89 10.993±5.21
ENSMUST00000172510 N/A N/A N/A 4.644±2.12 N/A N/A N/A N/A 1.495±0.97 N/A N/A 1.169±0.00 N/A N/A
ENSMUST00000172909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173031 N/A 2.574±0.00 N/A N/A N/A 7.937±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173110 N/A 1.770±0.53 N/A 3.444±0.00 N/A 2.155±0.14 N/A N/A 2.349±0.65 N/A N/A 2.513±1.20 3.008±1.21 6.984±0.00
ENSMUST00000173117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.229±0.00
ENSMUSG00000060214 ENSMUST00000059673 8.685±4.68 2.110±0.53 1.090±0.60 33.426±29.57 3.937±2.58 4.835±1.01 1.149±0.61 3.553±2.12 13.825±32.38 4.339±0.37 0.118±0.03 19.356±10.99 1.162±0.23 9.306±0.95
ENSMUSG00000092625 ENSMUST00000174032 0.200±0.13 0.188±0.00 0.064±0.00 0.068±0.00 0.213±0.17 N/A 0.069±0.00 0.153±0.00 0.044±0.04 0.213±0.09 0.077±0.00 0.260±0.17 0.076±0.03 0.106±0.04
ENSMUSG00000101878 ENSMUST00000173192 6.140±1.75 0.558±0.13 4.138±0.95 4.387±0.34 2.238±0.90 3.044±0.89 0.950±0.40 2.011±0.78 4.777±3.97 2.415±0.87 0.503±0.10 11.952±7.40 5.211±1.33 5.246±1.46

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