C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and coiled coil domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173110 Tmcc1-004 ENSMUSG00000030126 10090 - 6:116021618-116134430 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENSMUST00000173110
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENSMUST00000173110 1.770±0.53 3.444±0.00 2.155±0.14 2.349±0.65 2.513±1.20 3.008±1.21 6.984±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000315 CIL_000315_0002 CGP 6:115954811-116193486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086437 tmcc1b-201 protein_coding Danio_rerio 0 303
ENSDART00000086434 tmcc2-001 protein_coding Danio_rerio 0 198
ENST00000329800 TMCC2-003 protein_coding Homo_sapiens 0 233
ENST00000330675 TMCC2-004 protein_coding Homo_sapiens 0 233
ENST00000358024 TMCC2-001 protein_coding Homo_sapiens 0 233
ENST00000393238 TMCC1-001 protein_coding Homo_sapiens 0 2276
ENST00000426664 TMCC1-201 protein_coding Homo_sapiens 0 2276
ENST00000432054 TMCC1-002 protein_coding Homo_sapiens 0 2278
ENST00000468846 TMCC2-007 processed_transcript Homo_sapiens 0 222
ENST00000481950 TMCC2-006 processed_transcript Homo_sapiens 0 233
ENST00000495538 TMCC2-002 processed_transcript Homo_sapiens 0 233
ENST00000505616 TMCC1-003 protein_coding Homo_sapiens 0 326
ENST00000505924 TMCC1-004 retained_intron Homo_sapiens 0 326
ENST00000513411 TMCC1-008 protein_coding Homo_sapiens 5e-19 97
ENST00000518897 TMCC1P1-001 processed_pseudogene Homo_sapiens 0 774
ENST00000545499 TMCC2-201 protein_coding Homo_sapiens 0 233

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