C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and coiled-coil domain family 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172765 TMCC1 9606 - 3:129647792-129893576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000393238 TMCC1-001 129647792-129880466 protein_coding
  ENST00000426664 TMCC1-201 129647794-129893576 protein_coding
  ENST00000432054 TMCC1-002 129647792-129688732 protein_coding
  ENST00000503256 TMCC1-007 129848343-129869100 processed_transcript
  ENST00000505616 TMCC1-003 129671249-129893551 protein_coding
  ENST00000505924 TMCC1-004 129827756-129893532 retained_intron
  ENST00000508729 TMCC1-010 129857248-129893321 processed_transcript
  ENST00000508869 TMCC1-012 129832758-129893551 retained_intron
  ENST00000509440 TMCC1-006 129857360-129892745 processed_transcript
  ENST00000510323 TMCC1-013 129654967-129656726 protein_coding
  ENST00000510521 TMCC1-009 129880309-129893419 processed_transcript
  ENST00000512902 TMCC1-011 129828451-129893575 processed_transcript
  ENST00000513411 TMCC1-008 129828019-129867100 protein_coding
  ENST00000515024 TMCC1-005 129848346-129893576 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393238ENST00000426664ENST00000432054
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393238 N/A 1.107±0.00 N/A 1.667±0.00 0.610±0.00 1.284±0.00 1.217±0.04 0.612±0.00 2.640±0.00 3.152±0.00 2.815±0.12 1.150±0.03 3.063±0.91
ENST00000426664 1.205±0.00 0.971±0.00 2.154±0.00 4.497±0.00 1.487±0.00 2.079±0.00 1.739±0.00 1.005±0.00 1.874±0.00 2.347±0.61 1.953±0.82 N/A 3.887±1.44
ENST00000432054 N/A N/A N/A 0.628±0.00 N/A 0.461±0.00 0.607±0.00 0.395±0.00 0.514±0.00 0.525±0.00 0.815±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000315 CIL_000315_0001 CGP 3:129555175-129893576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060954 tmcc1b transmembrane and coiled-coil domain family 1b protein_coding Danio_rerio
ENSDARG00000076747 TMCC1 (2 of 2) transmembrane and coiled-coil domain family 1 protein_coding Danio_rerio
ENSMUSG00000030126 Tmcc1 transmembrane and coiled coil domains 1 protein_coding Mus_musculus

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