C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393278 MBD4-201 ENSG00000129071 9606 - 3:129430952-129440179 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 TAS DNA catabolic process, endonucleolytic
GO:0003696 TAS satellite DNA binding
GO:0003824 IEA catalytic activity
GO:0004520 TAS endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS:IEA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0008263 IDA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147282 Mbd4-002 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000032469 Mbd4-001 protein_coding Mus_musculus 0 704
ENSMUST00000133830 Mbd4-004 processed_transcript Mus_musculus 0 614

Loading