C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methyl-CpG binding domain protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129071 MBD4 9606 - 3:129430944-129440179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249910 MBD4-001 129430950-129440009 protein_coding
  ENST00000393278 MBD4-201 129430952-129440179 protein_coding
  ENST00000429544 MBD4-003 129430944-129440029 protein_coding
  ENST00000503197 MBD4-002 129431266-129440007 protein_coding
  ENST00000505883 MBD4-006 129437047-129439937 processed_transcript
  ENST00000507208 MBD4-009 129432176-129440035 protein_coding
  ENST00000509587 MBD4-004 129433859-129439940 processed_transcript
  ENST00000509828 MBD4-005 129431455-129439927 nonsense_mediated_decay
  ENST00000511009 MBD4-010 129432533-129433553 retained_intron
  ENST00000515266 MBD4-007 129432577-129434103 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249910ENST00000429544ENST00000503197ENST00000507208ENST00000509828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249910 N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000429544 4.533±0.00 7.690±0.00 2.216±0.00 4.392±0.39 4.210±0.16 3.529±0.00 1.618±0.77 6.975±0.00 3.263±1.11 3.788±0.00 0.986±0.00 5.456±3.10 3.281±1.46 N/A
ENST00000503197 3.978±0.00 7.032±0.00 N/A 5.108±0.00 2.685±0.00 4.155±0.00 3.534±0.00 5.718±0.00 5.269±0.00 3.216±1.34 1.881±1.27 4.577±1.14 2.768±0.47 11.836±0.00
ENST00000507208 N/A N/A N/A N/A 2.600±0.34 N/A N/A 4.056±1.65 N/A 3.124±0.00 1.262±0.00 3.488±2.01 2.882±0.00 N/A
ENST00000509828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.279±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 TAS DNA catabolic process, endonucleolytic
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0003696 TAS satellite DNA binding
GO:0003824 IEA catalytic activity
GO:0004520 TAS endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS:IEA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0008263 IDA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0008630 IEA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009314 IEA response to radiation
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030322 Mbd4 methyl-CpG binding domain protein 4 protein_coding Mus_musculus

Loading