C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394127 MED24-002 ENSG00000008838 9606 - 17:40019108-40054405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartMuscleOvaryPlacentaTestisENST00000394127
Transcript ID Adrenal Brain Breast Heart Muscle Ovary Placenta Testis
ENST00000394127 3.233±0.00 2.382±1.39 4.371±0.00 3.171±2.72 3.621±0.00 6.257±0.00 6.201±0.00 5.265±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002PX CIL_0002PX_0001 CGP 17:40015361-40061215
CIL_0002KL CIL_0002KL_0001 CGP 17:40019097-40093867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IDA RNA polymerase II transcription cofactor activity
GO:0003712 IDA transcription cofactor activity
GO:0004872 IDA receptor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016592 NAS mediator complex
GO:0030374 NAS ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0042809 NAS vitamin D receptor binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046966 IDA thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017354 Med24-002 protein_coding Mus_musculus 0 3323
ENSMUST00000125064 Med24-005 retained_intron Mus_musculus 0 2942
ENSMUST00000100500 Med24-010 protein_coding Mus_musculus 0 2931
ENSMUST00000138750 Med24-003 nonsense_mediated_decay Mus_musculus 0 2931
ENSMUST00000137328 Med24-001 retained_intron Mus_musculus 0 2043
ENSMUST00000144720 Med24-006 retained_intron Mus_musculus 0 617
ENSMUST00000139849 Med24-007 processed_transcript Mus_musculus 0 424
ENSMUST00000156378 Med24-009 retained_intron Mus_musculus 0 366
ENSMUST00000144048 Med24-012 retained_intron Mus_musculus 0 291
ENSMUST00000126565 Med24-011 protein_coding Mus_musculus 0 291
ENSMUST00000124371 Med24-008 retained_intron Mus_musculus 3.99931e-42 178

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