C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short coiled-coil protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394201 SCOC-010 ENSG00000153130 9606 + 4:140373643-140382525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394201 5.933±0.00 4.082±0.00 4.935±0.00 15.067±5.75 2.888±0.00 4.527±0.58 9.432±5.44 7.185±3.82 4.834±0.40 7.803±0.22 3.106±0.00 6.506±3.96 8.158±0.45 2.515±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046O CIL_00046O_0002 CGP 4:139716753-140385726
CIL_0006MV CIL_0006MV_0002 CGP 4:140257286-140427968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005802 IDA trans-Golgi network
GO:0016020 IEA membrane
GO:0016239 IDA positive regulation of macroautophagy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167525 Scoc-202 protein_coding Mus_musculus 0 610
ENSMUST00000081506 Scoc-201 protein_coding Mus_musculus 0 597
ENSMUST00000172475 Gm7335-001 processed_pseudogene Mus_musculus 0 387

Loading