C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short coiled-coil protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153130 SCOC 9606 + 4:140257286-140385726 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338517 SCOC-002 140343443-140382554 protein_coding
  ENST00000394201 SCOC-010 140373643-140382525 protein_coding
  ENST00000394203 SCOC-201 140343461-140382556 protein_coding
  ENST00000394205 SCOC-003 140257286-140382556 protein_coding
  ENST00000502535 SCOC-007 140376421-140381126 protein_coding
  ENST00000506322 SCOC-009 140343601-140381280 protein_coding
  ENST00000506597 SCOC-004 140373536-140382545 protein_coding
  ENST00000510586 SCOC-005 140373649-140382549 protein_coding
  ENST00000512749 SCOC-006 140373474-140381575 protein_coding
  ENST00000608372 SCOC-001 140373510-140385726 protein_coding
  ENST00000614192 SCOC-202 140373510-140382556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338517ENST00000394201ENST00000506597ENST00000608372ENST00000614192
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338517 N/A N/A N/A N/A N/A N/A N/A 14.834±0.00 N/A N/A 1.419±0.00 5.626±1.90 N/A N/A
ENST00000394201 5.933±0.00 4.082±0.00 4.935±0.00 15.067±5.75 2.888±0.00 4.527±0.58 9.432±5.44 7.185±3.82 4.834±0.40 7.803±0.22 3.106±0.00 6.506±3.96 8.158±0.45 2.515±0.00
ENST00000506597 N/A 2.915±0.00 N/A 6.763±0.00 3.773±2.85 3.427±0.00 0.749±0.00 8.836±0.00 2.300±0.00 6.211±0.00 N/A N/A 1.624±0.00 N/A
ENST00000608372 N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A N/A
ENST00000614192 3.920±0.00 4.720±0.00 N/A 21.706±15.04 5.293±4.21 5.033±3.66 4.223±3.15 N/A 3.420±1.45 N/A 2.985±0.00 5.610±2.39 1.858±0.61 12.583±7.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046O CIL_00046O_0002 CGP 4:139716753-140385726
CIL_0006MV CIL_0006MV_0002 CGP 4:140257286-140427968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005802 IDA trans-Golgi network
GO:0016020 IEA membrane
GO:0016239 IDA positive regulation of macroautophagy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087333 scoca short coiled-coil protein a protein_coding Danio_rerio
ENSMUSG00000063253 Scoc short coiled-coil protein protein_coding Mus_musculus

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