C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394633 PCDHA1-001 ENSG00000204970 9606 + 5:140786291-141010080 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070797 Pcdha10-204 protein_coding Mus_musculus 0 1570
ENSMUST00000047614 Pcdha10-203 protein_coding Mus_musculus 0 948
ENSMUST00000115657 Pcdha10-205 protein_coding Mus_musculus 0 891
ENSMUST00000115659 Pcdha10-207 protein_coding Mus_musculus 0 889
ENSMUST00000047479 Pcdha10-202 protein_coding Mus_musculus 0 889
ENSMUST00000115662 Pcdha10-209 protein_coding Mus_musculus 0 889
ENSMUST00000007584 Pcdha10-201 protein_coding Mus_musculus 0 887
ENSMUST00000115658 Pcdha10-206 protein_coding Mus_musculus 0 885
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 398

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