C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin alpha 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047479 Pcdha10-202 ENSMUSG00000007440 10090 + 18:37143969-37187657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000047479
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000047479 0.171±0.02 0.600±0.21 0.346±0.00 10.290±2.60 0.215±0.07 0.272±0.03 0.073±0.01 0.062±0.03 0.014±0.01 3.983±0.27 0.007±0.00 0.069±0.02 0.069±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253807 PCDHAC1-001 protein_coding Homo_sapiens 0 3356
ENST00000289269 PCDHAC2-001 protein_coding Homo_sapiens 0 6536
ENST00000289272 PCDHA13-003 protein_coding Homo_sapiens 0 3362
ENST00000307360 PCDHA10-002 protein_coding Homo_sapiens 0 3358
ENST00000394633 PCDHA1-001 protein_coding Homo_sapiens 0 889
ENST00000398631 PCDHA12-001 protein_coding Homo_sapiens 0 3356
ENST00000398640 PCDHA11-001 protein_coding Homo_sapiens 0 3358
ENST00000409494 PCDHA13-002 protein_coding Homo_sapiens 0 2351
ENST00000504120 PCDHA1-002 protein_coding Homo_sapiens 0 3354
ENST00000506939 PCDHA10-001 protein_coding Homo_sapiens 0 2551
ENST00000512229 PCDHA4-002 protein_coding Homo_sapiens 0 1474
ENST00000522353 PCDHA3-001 protein_coding Homo_sapiens 0 3354
ENST00000525929 PCDHA7-001 protein_coding Homo_sapiens 0 3354
ENST00000526136 PCDHA2-001 protein_coding Homo_sapiens 0 3358
ENST00000527624 PCDHA6-002 protein_coding Homo_sapiens 0 889
ENST00000529310 PCDHA6-001 protein_coding Homo_sapiens 0 3354
ENST00000529619 PCDHA5-002 protein_coding Homo_sapiens 0 1478
ENST00000529859 PCDHA5-001 protein_coding Homo_sapiens 0 3356
ENST00000530339 PCDHA4-001 protein_coding Homo_sapiens 0 3358
ENST00000531613 PCDHA8-001 protein_coding Homo_sapiens 0 3354
ENST00000532602 PCDHA9-001 protein_coding Homo_sapiens 0 3358
ENST00000613766 PCDHAC2-003 processed_transcript Homo_sapiens 0 673
ENST00000615316 PCDHAC2-002 protein_coding Homo_sapiens 0 3182
ENST00000617408 PCDHA11-003 protein_coding Homo_sapiens 0 394
ENST00000617566 PCDHAC2-004 retained_intron Homo_sapiens 0 252

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