C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394963 SMARCD1-001 ENSG00000066117 9606 + 12:50084972-50100712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000394963
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000394963 3.333±0.00 2.961±0.00 1.079±0.51 1.426±0.69 1.169±0.00 0.993±0.81 0.318±0.00 1.687±0.00 6.718±3.39 7.246±0.83 4.318±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000F4 CIL_0000F4_0001 CGP 12:50084972-50111319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0032947 IDA protein complex scaffold
GO:0048096 IMP chromatin-mediated maintenance of transcription
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023759 Smarcd1-201 protein_coding Mus_musculus 0 2401
ENSMUST00000163472 Gm17349-201 protein_coding Mus_musculus 0 359

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