C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394997 HIF1A-003 ENSG00000100644 9606 + 14:61695540-61748258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394997
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394997 12.398±0.00 7.600±4.76 5.760±0.32 3.019±0.00 4.366±1.55 15.022±13.15 3.230±0.00 33.004±0.00 0.189±0.00 7.802±3.44 7.427±2.22 9.511±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S0 CIL_0000S0_0001 CGP 14:61695513-61796428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110461 Hif1a-003 protein_coding Mus_musculus 0 3025
ENSMUST00000021530 Hif1a-001 protein_coding Mus_musculus 0 2100
ENSMUST00000110464 Hif1a-002 protein_coding Mus_musculus 0 1114
ENSMUST00000157041 Hif1a-005 processed_transcript Mus_musculus 0 466
ENSMUST00000149740 Hif1a-004 retained_intron Mus_musculus 0 340

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